Locus 8589

Sequence ID	dm3.chr3RHet
Location	1,205,898 – 1,206,007
Length	109
Max. P	0.856336

overview

Window 5

Location	1,205,898 – 1,206,007
Length	109
Sequences	3
Columns	118
Reading direction	reverse
Mean pairwise identity	71.75
Shannon entropy	0.38911
G+C content	0.51801
Mean single sequence MFE	-38.50
Consensus MFE	-23.61
Energy contribution	-26.17
Covariance contribution	2.56
Combinations/Pair	1.04
Mean z-score	-1.86
Structure conservation index	0.61
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.94
SVM RNA-class probability	0.856336
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3RHet 1205898 109 - 2517507
-CAUACGUGUGCACACAUA-CAGUUGUCUGCUAUCACUUUGUGCGU--UGAAAAGAGCU---GUUCGCUGUAGCGCUCUCCGCUCUCUCGC-UCUCUAACAAAAAUUCGAGAGAGCC-
-.....(((.(((.(((..-....))).)))...)))...(.((((--((.....(((.---....))).)))))).)...(((((((((.-...............))))))))).- ( -30.59, z-score =  -1.20, R)
>droPer1.super_56 87539 118 - 431378
GAAGACGUGUGCACCAAUACCAACAAAUCGCAGUCGUCGGCUGCCUCAUGUACACAGCGUGAGAGCGCGGUGGCUUUCCGAGCUCUCUCGUGGCUUUCAAAAAAGUUUCAGAGAGCCA
......(((((((................(((((.....)))))....))))))).(((.((((((.(((.......))).)))))).)))(((((((............))))))). ( -42.45, z-score =  -2.19, R)
>dp4.chrXL_group3b 66967 118 - 386183
GAAGACGUGUGCACCAAUACCAACAAAUCGCAGUCGUCGGCUGCCUCAUGUACACAGCGUGAGAGCGCGGUGGCUUUCCGAGCUCUCUCGUGGCUUUCAAAAAAGUUUCAGAGAGCCA
......(((((((................(((((.....)))))....))))))).(((.((((((.(((.......))).)))))).)))(((((((............))))))). ( -42.45, z-score =  -2.19, R)
>consensus
GAAGACGUGUGCACCAAUACCAACAAAUCGCAGUCGUCGGCUGCCUCAUGUACACAGCGUGAGAGCGCGGUGGCUUUCCGAGCUCUCUCGUGGCUUUCAAAAAAGUUUCAGAGAGCCA
..........(((((..............(((((.....)))))............((((....))))))).)).......(((((((...((((((....))))))..))))))).. (-23.61 = -26.17 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:22 2011