| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,205,139 – 1,205,203 |
| Length | 64 |
| Max. P | 0.998935 |
| Location | 1,205,139 – 1,205,203 |
|---|---|
| Length | 64 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 71.21 |
| Shannon entropy | 0.52326 |
| G+C content | 0.47601 |
| Mean single sequence MFE | -18.84 |
| Consensus MFE | -12.38 |
| Energy contribution | -12.90 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.56 |
| SVM RNA-class probability | 0.998935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1205139 64 - 2517507 UAUCGAAGUGCUGGUGCGGCGGUUCUUGUUUCUUAACCGAGAAUUGUCGCAAUC-ACAUCCUGUC ....((.(((....((((((((((((((.........))))))))))))))..)-)).))..... ( -22.00, z-score = -3.19, R) >droEre2.scaffold_4690 735837 64 + 18748788 UAUCGAAGUGCUGGUGCGGCGGUUCUUGCUUCUUAACCGAGAAUUGUCGCAAUC-ACAUCCUGUC ....((.(((....((((((((((((((.........))))))))))))))..)-)).))..... ( -21.70, z-score = -2.84, R) >droYak2.chrU 26130695 63 + 28119190 CAAGAAAACGCUAAUGCGGUUCUCAUUUCUGUUUAUA--AGAACUGUCGCAAUGGACAUCCUGUC .........((....((((((((.((........)).--)))))))).))...((....)).... ( -10.60, z-score = -0.42, R) >droSec1.super_221 6401 63 - 22503 --CCGAAAUGCUGCUGCGGCAGUUCUAGUUUUGUUUACCAGAACUGUCGCAAUCGACAUCCUGUC --............((((((((((((.((.......)).))))))))))))...(((.....))) ( -21.20, z-score = -3.36, R) >droSim1.chrU 10622382 55 + 15797150 --------UGCUGUUGCGGCAGUUCCAGUUAUUCAUCC--GAACUGUCGCAAUUGACAUCCUGUC --------(((.(((((((((((((.............--))))))))))))).).))....... ( -18.72, z-score = -3.51, R) >consensus _AUCGAAAUGCUGGUGCGGCAGUUCUUGUUUUUUAUCC_AGAACUGUCGCAAUCGACAUCCUGUC ..............((((((((((((.............)))))))))))).............. (-12.38 = -12.90 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:21 2011