| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,168,439 – 1,168,503 |
| Length | 64 |
| Max. P | 0.990985 |
| Location | 1,168,439 – 1,168,503 |
|---|---|
| Length | 64 |
| Sequences | 3 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 62.32 |
| Shannon entropy | 0.51904 |
| G+C content | 0.43086 |
| Mean single sequence MFE | -19.57 |
| Consensus MFE | -11.81 |
| Energy contribution | -12.93 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.45 |
| SVM RNA-class probability | 0.990985 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1168439 64 + 2517507 AAAGUGGUGCUCACUGCAUUGGUUUA--UUGCAAUGGUUUUUG---AGCCGCAAUCUGCGACUAUGUUG ...((((((((((...(((((.....--...))))).....))---)))(((.....)))))))).... ( -15.40, z-score = -0.34, R) >dp4.Unknown_group_55 30162 69 + 31046 AAUGUUGUUGUAAGAGUGGUAGCGCAGUUUCCGAUAGCUGUAACAUGGUUACCACCGUCGGCAAUUUUU ...(((((((...(.((((((((((((((......))))))......)))))))))..))))))).... ( -22.10, z-score = -2.92, R) >droPer1.super_727 3708 69 - 9243 AAUUUUGUUGUAAGAGUGGUAGCGCAGUUUCCGAUAGCUGUAACAUGGUUACCACCGUCGGCAAUUUUU ....((((((...(.((((((((((((((......))))))......)))))))))..))))))..... ( -21.20, z-score = -2.95, R) >consensus AAUGUUGUUGUAAGAGUGGUAGCGCAGUUUCCGAUAGCUGUAACAUGGUUACCACCGUCGGCAAUUUUU ...(((((((.....((((((((((((((......))))))......))))))))...))))))).... (-11.81 = -12.93 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:20 2011