| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,158,984 – 1,159,073 |
| Length | 89 |
| Max. P | 0.761330 |
| Location | 1,158,984 – 1,159,073 |
|---|---|
| Length | 89 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 70.15 |
| Shannon entropy | 0.51485 |
| G+C content | 0.46912 |
| Mean single sequence MFE | -20.72 |
| Consensus MFE | -7.92 |
| Energy contribution | -6.64 |
| Covariance contribution | -1.28 |
| Combinations/Pair | 1.53 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1158984 89 - 2517507 ---UUCGCGCAGCGAGUUUCGAACGCACCGAAGAUCUA-CACACAAUUAAUUUGUGUCACUCACUUC---UUCUCCGUGCUAUCCUUCGAACCACA ---.((((...))))(.((((((.((((.(((((....-.((((((.....))))))........))---)))...)))).....)))))).)... ( -20.92, z-score = -2.78, R) >droSim1.chrU 3606100 89 - 15797150 ---UUCGCGCAGCGAGUUUCGAACGCACAGAAGAUCUA-CACACAAUUAAUUUGUGUCCCUCACUUC---UUCUCCGUGCUAUCCUUCGAACCACA ---.((((...))))(.((((((.((((((((((....-.((((((.....))))))........))---))))..)))).....)))))).)... ( -22.42, z-score = -3.50, R) >droSec1.super_64 135590 89 + 179039 ---UUCGCGCAGCGAGUUUCGAACGCACCGAAGAUCUA-CACACAAUUAAUUUGUGUCACUCACUUC---UUCUCCGUGCUAUCCUUCGAACCACA ---.((((...))))(.((((((.((((.(((((....-.((((((.....))))))........))---)))...)))).....)))))).)... ( -20.92, z-score = -2.78, R) >droAna3.scaffold_12911 709450 93 - 5364042 ---AAGGCACAGCAAGUUCUGUUCGUUUCGGCGGUGCGUCUCUUAAUGAUCUUGCUAUACAAGCUUCAGUCUUUUCUCCGUUGCCAUCGAACUAUA ---.................(((((....(((..((..........(((.((((.....))))..)))..........))..)))..))))).... ( -16.65, z-score = 0.70, R) >droMoj3.scaffold_6498 2343031 92 - 3408170 CGUUUCGCGCAGCGAGUUUCGACCGCACUUGAAUUCUG-GACGCAACUAACUUGUGUCUCUCAAUUA---UUCUUUGUGCCUACCAUCGAACCUCA .............(((.(((((..((((..((((...(-(((((((.....)))))))).......)---)))...))))......))))).))). ( -22.70, z-score = -2.00, R) >consensus ___UUCGCGCAGCGAGUUUCGAACGCACCGAAGAUCUA_CACACAAUUAAUUUGUGUCACUCACUUC___UUCUCCGUGCUAUCCUUCGAACCACA .....(((((..((.....))...))...((((.......((((((.....))))))......)))).........)))................. ( -7.92 = -6.64 + -1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:18 2011