| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,091,782 – 1,091,848 |
| Length | 66 |
| Max. P | 0.908497 |
| Location | 1,091,782 – 1,091,848 |
|---|---|
| Length | 66 |
| Sequences | 3 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 94.95 |
| Shannon entropy | 0.06957 |
| G+C content | 0.50505 |
| Mean single sequence MFE | -20.20 |
| Consensus MFE | -20.20 |
| Energy contribution | -20.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.908497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1091782 66 - 2517507 AGGGGCGCCCCGUUAGGCAUGUAAAGAUCGAAAGGAUAUUGGGGAUGACUCCCGUAAUGCAUGUAC .(((....))).....(((((((....((....))......((((....))))....))))))).. ( -20.80, z-score = -1.46, R) >droSec1.super_28 694161 66 + 873875 GGGGGCGGCCCGUAAGGCAUGUAAAGAUCGAAAGGAUAUUGGGGAUGAUUCCCGUAAUGCAUGUAA .(((....))).....(((((((....((....))......((((....))))....))))))).. ( -19.90, z-score = -1.38, R) >droSim1.chr2h_random 2418083 66 + 3178526 GGGGGCGGCCCGUAAGGCAUGUAAAGAUCGAAAGGAUAUUGGGGAUGAUUCCCGUAAUGCAUGUAA .(((....))).....(((((((....((....))......((((....))))....))))))).. ( -19.90, z-score = -1.38, R) >consensus GGGGGCGGCCCGUAAGGCAUGUAAAGAUCGAAAGGAUAUUGGGGAUGAUUCCCGUAAUGCAUGUAA .(((....))).....(((((((....((....))......((((....))))....))))))).. (-20.20 = -20.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:17 2011