| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,078,138 – 1,078,211 |
| Length | 73 |
| Max. P | 0.575054 |
| Location | 1,078,138 – 1,078,211 |
|---|---|
| Length | 73 |
| Sequences | 5 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 63.86 |
| Shannon entropy | 0.62884 |
| G+C content | 0.45758 |
| Mean single sequence MFE | -9.93 |
| Consensus MFE | -4.14 |
| Energy contribution | -5.10 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575054 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1078138 73 - 2517507 CGACUACACGCAUACUCAUUAUUUUCGCCACGACACGGCCAUUCUGACAUUUACACGUCCUCGUGUAAGCUUU .........((...............(((.......)))...........(((((((....)))))))))... ( -13.10, z-score = -1.79, R) >droAna3.scaffold_13099 1714194 58 - 3324263 -----------AUAUCC--AACUUAU-CUCCGACACGGCCUUCCUGACUAUAACACGUCCUCGUCUUGUUUU- -----------......--.......-....((((.(((......(((........)))...))).))))..- ( -4.90, z-score = -0.15, R) >droEre2.scaffold_4853 14990 60 - 70272 -----------ACAUGC-AAAAUUAUGCUCCGACACGGCCAUCCUGACCAUUACACGACCUCGUGAAAUAUU- -----------....((-(......)))........((.(.....).))....((((....)))).......- ( -7.50, z-score = -0.60, R) >droMoj3.scaffold_6399 38573 65 + 42209 ------UAUAUUAAUAC--UACUUGUGCUUCGACACGGCCAUCCUGACCUUAACACGGCCUCGUGUAAUAUUA ------.((((((.(((--.....(((......)))((((................))))..))))))))).. ( -10.89, z-score = -1.16, R) >droVir3.scaffold_13036 535839 59 + 1135500 --------CACAUAGACAUUCCGUAUGCGCCGACACGGCCAUUCUAACUCUAACACGUCCUCGUGUA------ --------....((((........(((.((((...)))))))......))))(((((....))))).------ ( -13.24, z-score = -1.92, R) >consensus ___________AUAUAC__UACUUAUGCUCCGACACGGCCAUCCUGACCAUAACACGUCCUCGUGUAAUAUU_ .................................................((((((((....)))))))).... ( -4.14 = -5.10 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:16 2011