| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,025,402 – 1,025,493 |
| Length | 91 |
| Max. P | 0.638415 |
| Location | 1,025,402 – 1,025,493 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 56.97 |
| Shannon entropy | 0.68128 |
| G+C content | 0.48629 |
| Mean single sequence MFE | -29.65 |
| Consensus MFE | -11.52 |
| Energy contribution | -11.78 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1025402 91 + 2517507 ------GUCGAUGAAGGCAGGGGUCUUGAGAGUGA---UG-GGGCCUUCUUCCUUAGCUCAGGGAGAAUCUUUGGAGCGAGACAAUAUUCUGGUCAGUGCG ------(((((.((((((....(((.(....).))---).-..)))))).))....((((((((.....)))).))))..))).................. ( -24.00, z-score = 1.40, R) >droYak2.chrU 184248 92 - 28119190 -----AUUUAAAACUGGUUAGGAUCU-GAAAGUGA---UGAAGGCCUUCUUUCUUAGCUCAGGGAGAACCUUUGGAGCGAGAUAAGAUUCUAGCCAGUGCG -----.......((((((((((((((-....((..---((((((..((((..((......))..))))))))))..))......))))))))))))))... ( -34.80, z-score = -3.69, R) >droEre2.scaffold_4929 312672 98 - 26641161 AUGAGUUUUGAUAUUUGCAGCUAAACGAUAUAUCAAGUUGAUGAGCUGCAACUAAAACUUGACGACGACGUUCGG---GAAGCUCUGCUAUAGGUGGCACG ..(((((((.....((((((((...((((.......))))...))))))))......((.((((....)))).))---)))))))(((((....))))).. ( -27.70, z-score = -2.23, R) >droSec1.super_42 151318 92 + 298440 ------UUCGAUGUCGGCAGGGGUCUUGAGAGUGA---UGAGGGUCUUCCUCCUGAGCUCAGGGAGAUUCUUUGGGGUGAGACAAGAUUCUGGCCAGAGCG ------.........(((.(((((((((.......---.((((.....))))((.(.(((((((.....))))))).).)).))))))))).)))...... ( -32.10, z-score = -0.02, R) >consensus ______UUCGAUAUUGGCAGGGAUCUUGAAAGUGA___UGAGGGCCUUCUUCCUUAGCUCAGGGAGAACCUUUGGAGCGAGACAAGAUUCUAGCCAGUGCG ...............(((.(((((((((...........((((.....))))....((((((((....))))..))))....))))))))).)))...... (-11.52 = -11.78 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:15 2011