| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,019,509 – 1,019,601 |
| Length | 92 |
| Max. P | 0.570399 |
| Location | 1,019,509 – 1,019,601 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 80.14 |
| Shannon entropy | 0.27353 |
| G+C content | 0.40585 |
| Mean single sequence MFE | -19.39 |
| Consensus MFE | -15.20 |
| Energy contribution | -15.53 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1019509 92 + 2517507 GAAGGCAAAUGAGCAAGUUUCACAAAAUAAAGAUUUAAACAGCUGUGCUCGCUCUCUAUUGAGAGAGAG--GAACAUAGCACAAAGGGGAAUGC ............(((..(..(...((((....)))).....((((((.((.((((((......))))))--)).)))))).....)..)..))) ( -22.40, z-score = -1.90, R) >droSec1.super_69 77185 94 - 174750 GAAGGCAAAUGAGCAAGUUUCACAAAACAAAGAUUUAAACAGUUGUGCUCGCUCUCUAUUGAGAGAGAGAGGAACAUAGCACAAAGGGGAAUGC ............(((..(..(.(........).........(((((((((.((((((....)))))).)))...)))))).....)..)..))) ( -19.50, z-score = -0.83, R) >droYak2.chr2h_random 452764 77 + 3774259 GAAGGCAAAUAAGCAAGUGUCACAAGAUAAAGAUUUAAA-AACUGUGCUCGCUCUCUAUUACGAGAGAGAGGAACACA---------------- ....((......))..((((((((...............-...))))(((.(((((......))))).)))..)))).---------------- ( -16.27, z-score = -1.41, R) >consensus GAAGGCAAAUGAGCAAGUUUCACAAAAUAAAGAUUUAAACAGCUGUGCUCGCUCUCUAUUGAGAGAGAGAGGAACAUAGCACAAAGGGGAAUGC ....((......))...........................((((((.((.((((((......))))))..)).)))))).............. (-15.20 = -15.53 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:14 2011