| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,238,759 – 6,238,853 |
| Length | 94 |
| Max. P | 0.883918 |
| Location | 6,238,759 – 6,238,853 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 69.52 |
| Shannon entropy | 0.56157 |
| G+C content | 0.48018 |
| Mean single sequence MFE | -27.99 |
| Consensus MFE | -12.44 |
| Energy contribution | -14.10 |
| Covariance contribution | 1.66 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6238759 94 + 23011544 -UUUCUGGCUUGAUG-UGCCCGCUUGGUUACGCCCGGCGGC---AAAAACUAAUAAAGCUCCUUGUUAUGGGCCACUCUCCAU-AAAAUCCAAGACCAGC---- -...((((((((...-((((.(((.((.....)).))))))---)....................(((((((......)))))-))....)))).)))).---- ( -27.20, z-score = -1.44, R) >droSim1.chr2L 6035454 94 + 22036055 -UUUCUGGCUUGAUG-UGCCCGCUUGGUUACGCCCGGCGGC---AAAAACUAAUAAAGCUCCUUGUUAUGGACCACUCUCCAU-AAAAAUCGAGACCAGC---- -...((((((((((.-((((.(((.((.....)).))))))---)....................(((((((......)))))-))..)))))).)))).---- ( -30.40, z-score = -3.26, R) >droSec1.super_5 4309968 94 + 5866729 -UUUCUGGCUUGAUG-UGCCCGCUUGGUUACGCCCGGCGGC---AAAAACUAAUAAAGCUCCUUGUUAUGGGCCACUCUCCAU-AAAAAUCGAGACCAGC---- -...((((((((((.-((((.(((.((.....)).))))))---)....................(((((((......)))))-))..)))))).)))).---- ( -29.50, z-score = -2.11, R) >droYak2.chr2L 15654409 94 - 22324452 -UUUCUGGCUUGAUG-UGCCUGCUUGGUUACGCCCGGCGGC---GAAAACUAAUAAAGCUCCUUGUUAUGGGCAACUCUCCAU-AAAAAUCGAGACCAGC---- -...((((((((((.-((((.(((.((.....)).))))))---)....................(((((((......)))))-))..)))))).)))).---- ( -28.80, z-score = -1.96, R) >droEre2.scaffold_4929 15163895 94 + 26641161 -UUUUCGGCUUGAUG-UGCCUGCCUGGUUACGCCCGGCGGC---AGAAACUAAUAAAGCUCCUUGUUAUGGGCAACUCUCCAU-AAAAAUCGAGACCAGC---- -.....((((((((.-((((.(((.((.....)).))))))---)....................(((((((......)))))-))..)))))).))...---- ( -28.70, z-score = -1.60, R) >droPer1.super_5 135299 94 - 6813705 CCUCCUGCCCGGCU--CUGCUGCUUAGUAACGCCCUGUGGC---AAAAGUGAAGAAAAAUUAAUUAAGCAGCUUGUUAUGAGUGGAAGA-CACCAUCAGC---- ....(((...(((.--..((((((((((...(((....)))---...(((........))).))))))))))..)))(((.(((.....-))))))))).---- ( -22.40, z-score = -0.16, R) >droWil1.scaffold_180708 7429146 104 + 12563649 GUUGUGGGUGAGUUAUCUGCUGCUUAGUUACGCCCUGAGGCGGUAAAAGUGUAGAAAAAUUAAUUAAGCAGCUUGUUAUAGGUUAAAGAACACCCAAGGUUUAC ....((((((((....))(((((((((((.((((....)))).....(((........))))))))))))))..................))))))........ ( -28.90, z-score = -1.77, R) >consensus _UUUCUGGCUUGAUG_UGCCUGCUUGGUUACGCCCGGCGGC___AAAAACUAAUAAAGCUCCUUGUUAUGGGCCACUCUCCAU_AAAAAUCGAGACCAGC____ ....((((((((((.....(((((.((.....)).)))))...........................(((((......))))).....)))))).))))..... (-12.44 = -14.10 + 1.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:47 2011