| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 1,006,242 – 1,006,317 |
| Length | 75 |
| Max. P | 0.570332 |
| Location | 1,006,242 – 1,006,317 |
|---|---|
| Length | 75 |
| Sequences | 4 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 80.67 |
| Shannon entropy | 0.32049 |
| G+C content | 0.57353 |
| Mean single sequence MFE | -17.48 |
| Consensus MFE | -13.30 |
| Energy contribution | -14.67 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570332 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 1006242 75 + 2517507 CCACUUGGUCACUUUAGCUAUAGUCACCGAUCGUGGCCACUACCUGGUCCUGAUCCACACUCUGUACCACACCAC ......(((.(((........))).)))(((((.(((((.....))))).))))).................... ( -16.30, z-score = -0.90, R) >droSec1.super_6 16923 74 + 4358794 CUACUUGGUCACUUCAGC-AUAGUCACCGAUCGUGGCCACCACCUGGUCCUGAUCCGCACUCUGUACCACACCAC .....((((.......((-(.(((..(.(((((.(((((.....))))).))))).).))).))).....)))). ( -16.70, z-score = -0.70, R) >droYak2.chrU 25442315 75 - 28119190 CCAAUUGGUCACCUGAGCUACAGUCACCUAUCGGGGCCACCACCUUGACCCGAUCCGCACUCAGUACCACACCAG .....((((...(((((....((....))((((((..((......)).)))))).....))))).))))...... ( -16.00, z-score = -0.60, R) >droSim1.chrX_random 5602554 61 + 5698898 --------------CAGCUAUAGUCACCGAUCGGGGCCACCACCUGGUCCUGAUCCGCACUCUGUACCACACCAC --------------..(.(((((...(.(((((((((((.....))))))))))).)....))))).)....... ( -20.90, z-score = -2.82, R) >consensus CCACUUGGUCACUUCAGCUAUAGUCACCGAUCGGGGCCACCACCUGGUCCUGAUCCGCACUCUGUACCACACCAC ................(.(((((.....(((((((((((.....)))))))))))......))))).)....... (-13.30 = -14.67 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:12 2011