| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 982,625 – 982,738 |
| Length | 113 |
| Max. P | 0.800667 |
| Location | 982,625 – 982,738 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 68.82 |
| Shannon entropy | 0.60070 |
| G+C content | 0.55882 |
| Mean single sequence MFE | -33.84 |
| Consensus MFE | -20.37 |
| Energy contribution | -21.07 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800667 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 982625 113 + 2517507 ACCACGUGAGCAGCAACGUGCCACGUUGACAUCCCCUUGCAACAA-CGGUGCAGGCGGAGGAGUUCGCGGGCAACUACCUUGCCGCGUCCAUCUUUAAAUCAUAUCUGGCGCCC ....(((((((.((((((.....))))).).(((.((((((....-...)))))).)))...)))))))(((((.....)))))(((.(((...............)))))).. ( -38.06, z-score = -0.92, R) >droSim1.chrU 13950428 113 - 15797150 ACCACGUGAGCAGCAACGUGCCACGUUGACAUCCCCUUGCAACAA-CGGUGCAGGCGGAGGAUUUCGCGGGCAACUACCUUGCCGCGUCCAUCUUUAAAUCAUAUCUGGCGCCC ....(....).......((((((.(((((..(((.((((((....-...)))))).)))(((...(((((.(((.....))))))))))).........))).)).)))))).. ( -34.40, z-score = -0.16, R) >droSec1.super_6 10071 113 + 4358794 ACUACGUGAGCAGCAACGUGCCACGUUGACAUCCCCUUGCAACAA-CGGUGCAGGCAAAGGAGUUCGCGGGCAACUACCUUGCCGCGUCCAUCAUCAAAUCAUAUCUGGCGCCC ....(((((((.((((((.....))))).).(((.((((((....-...))))))....))))))))))(((((.....)))))(((.(((...............)))))).. ( -35.26, z-score = -0.78, R) >droYak2.chrU 25255481 113 - 28119190 AUCCCGUGAGCAGCGACGUGCCACGGGGACA-CCUCCUGGAGCAAACGUCGCAGGUGGAGGAUCUUGCGCGCAACCACCUUGCCGCAUACAUCUUUAAAUUAUAUCUUAUAUCC .(((((((.(((......))))))))))...-((.((((..((....))..)))).))(((((..((((.((((.....))))))))...)))))................... ( -36.60, z-score = -1.74, R) >droEre2.scaffold_4845 20628745 110 - 22589142 AUCCCGUGAGCAGCGACUUGCCACGGGGACA-CCUCCUGCAGCAAACGGCGCAGGUGGAGGAUCUUGCGCACAACUUCCUUG---CAUCCGUCAUUAAAUCAUAUCUGGCGCCC ..((((((.((((....))))))))))(((.-((.(((((.((.....))))))).))((((..(((....)))..))))..---.....)))..................... ( -37.40, z-score = -1.02, R) >droAna3.scaffold_13250 1014007 89 + 3535662 ----ACCGUGUAGCAACGU--UAUAACCAUAACCCCCAGUAAGAC-CCGUGCGGGUGGAGAAUAUUGUGGGUGAACACUCCGCCACAGUAUUACCU------------------ ----.((.((((((...))--))))..................((-((....))))))..(((((((((((.((....))).))))))))))....------------------ ( -21.30, z-score = 0.23, R) >consensus ACCACGUGAGCAGCAACGUGCCACGUUGACAUCCCCCUGCAACAA_CGGUGCAGGCGGAGGAUUUCGCGGGCAACUACCUUGCCGCAUCCAUCUUUAAAUCAUAUCUGGCGCCC ...(((((.(((......))))))))......((.((((((.(....).)))))).)).(((...((((.((((.....)))))))))))........................ (-20.37 = -21.07 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:10 2011