| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 982,271 – 982,358 |
| Length | 87 |
| Max. P | 0.992213 |
| Location | 982,271 – 982,358 |
|---|---|
| Length | 87 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 62.85 |
| Shannon entropy | 0.66819 |
| G+C content | 0.43429 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -11.78 |
| Energy contribution | -11.20 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.53 |
| SVM RNA-class probability | 0.992213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 982271 87 + 2517507 ----------------AUAAAGUGAUGUUAU--CGUAAGAUACCUGCCGUGAAUAUCAAGUCGGAGCUACGACCCUGCUACCGGCUUAUUCCAGUUGGUCACUUC ----------------...((((((...(((--(....))))((.((.(.(((((...(((((((((.........))).)))))))))))).)).)))))))). ( -26.80, z-score = -2.93, R) >droSim1.chr3h_random 1259991 87 + 1452968 ----------------AUAAAGUGACGUUAU--CGUUAAAUAACUGCCGUGAAUAUCAAGUCGGAGCUACGACCCUGCUACCGGCUUAUUCCAGUUGGUCACUUC ----------------...(((((((.(((.--...))).((((((....(((((...(((((((((.........))).)))))))))))))))))))))))). ( -25.40, z-score = -2.78, R) >droSec1.super_28 65137 72 + 873875 ----------------AUAAAGUGACGUUAU--CGUAAAAUACCUGCCGGGAAUAUCAAGUCGGAGCUACGACCCUGCUACCGACUUAUU--------------- ----------------........(((....--)))......((.....))......((((((((((.........))).)))))))...--------------- ( -15.70, z-score = -1.00, R) >droYak2.chrU 25255256 104 - 28119190 AUAAAGGCCCAUCAUCGUAAUCGAAUCUUUUA-UUUAAUAUAACCACUGUCAAUAUCAAGUCAGAGCUACGACCCUGCUACCGGCUUAUUCCAGUUGGUCACUUG .....((((.....(((....)))........-............((((..((((...((((.((((.........))).).)))))))).)))).))))..... ( -14.80, z-score = 0.13, R) >droEre2.scaffold_4845 20628515 104 - 22589142 AUAAAGACUCAUCAUCGUAAUCGAGUCUUUUA-UUUAAAAUAACCGCUGUAAAUAUCAAGUUGGAGCUACGACCCUGCUACCGGCUUAUUCCAGUUGGUCACCUG ..((((((((............))))))))..-.........(((((((..((((...(((((((((.........))).)))))))))).))).))))...... ( -22.60, z-score = -1.91, R) >droAna3.scaffold_13250 1013536 101 + 3535662 AUAAAGACACCAUAUCUGAGACGGGUCUUUUUAUCUUUGUCAACCGCCGCGACAGUAUAGCUGAAGCUAAGACCCUGCUAUCAGCUUACUGGAAGAAGUUC---- ..((((((.((...........))))))))...(((((((........))..(((((.(((((((((.........))).)))))))))))))))).....---- ( -24.90, z-score = -1.11, R) >consensus ________________AUAAACGGAUCUUAU__CGUAAAAUAACCGCCGUGAAUAUCAAGUCGGAGCUACGACCCUGCUACCGGCUUAUUCCAGUUGGUCACUU_ .........................................................((((((((((.........))).))))))).................. (-11.78 = -11.20 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:09 2011