| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 929,860 – 929,936 |
| Length | 76 |
| Max. P | 0.587590 |
| Location | 929,860 – 929,936 |
|---|---|
| Length | 76 |
| Sequences | 3 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 52.19 |
| Shannon entropy | 0.69947 |
| G+C content | 0.40715 |
| Mean single sequence MFE | -12.73 |
| Consensus MFE | -5.81 |
| Energy contribution | -6.60 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.80 |
| Mean z-score | -0.64 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 929860 76 - 2517507 GGACUGGAAGGCCAUGUCGAGAUGUCUCACUCUACAUUACGCAGAUAAACGAGACAUAACUACCUUGAAAUGCAAA .((((((....))).)))...(((((((..(((.(.....).))).....)))))))................... ( -13.50, z-score = -0.53, R) >droWil1.scaffold_181146 52741 76 - 351886 ACAUUGGGAGGCAAUCUCGAAAUGCCUUCUAGAGGAAUAUUCAGACAGACGAGACUUGGGAACACUAGAAUAUCAA .(.((((((((((.........)))))))))).)((.(((((((.(......)...((....)))).))))))).. ( -14.80, z-score = -0.66, R) >anoGam1.chrU 6873781 71 + 59568033 --GGCAUCAGAUAAAAUCAACA---CUGAUGCUAUAUUACAAAGAUAAGCGUGACGUGAAGACCCUAGACUAUUAA --((((((((............---))))))))........................................... ( -9.90, z-score = -0.73, R) >consensus __ACUGGAAGGCAAUAUCGAAAUG_CUCAUACUACAUUACACAGAUAAACGAGACAUGAAAACCCUAGAAUAUAAA ..((((((((((...........))))))))))........................................... ( -5.81 = -6.60 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:08 2011