| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 928,987 – 929,083 |
| Length | 96 |
| Max. P | 0.616558 |
| Location | 928,987 – 929,083 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 55.56 |
| Shannon entropy | 0.63814 |
| G+C content | 0.35913 |
| Mean single sequence MFE | -22.60 |
| Consensus MFE | -7.22 |
| Energy contribution | -8.23 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 928987 96 - 2517507 UUGCAUUUUUUAGAGUAGAAGACUCCUCACUACCAUAAUUCGUAUGUAGAGUGGGGAGUGGGAGGGUUUUAUGAGUGUUGAUUGACACAGACUCUU ...........(((((..(((((((((((((.((...((((.......))))..)))))))).)))))))....(((((....)))))..))))). ( -29.90, z-score = -2.56, R) >droYak2.chrU 6614035 91 + 28119190 ----AUUUUUUAGAAAAAAA-AAUCCUCUCUUCCAUACUUUUUAUGCAAGAUGAGGAAUGGCAAAUUUAUUAGAAUACUUAUAGACACCGGUUCAA ----........(((.....-..(((((((((.((((.....)))).)))).))))).(((....(((((.((....)).)))))..))).))).. ( -15.30, z-score = -1.25, R) >droWil1.scaffold_181146 51680 96 - 351886 GUUAAUUUUUUAGGAUGAAGUGUUCCUCUUUGCCGUACUUUGUAGUCCGGGACAAAGACGGAACAGCAUACAAUUUCUUAAUAGAUACCGGUUCAA ............(((((...(((((((((((((((.(((....))).)))..)))))).)))))).)))......(((....)))..))....... ( -22.60, z-score = -1.30, R) >consensus _U__AUUUUUUAGAAUAAAA_AAUCCUCUCUACCAUACUUUGUAUGCAGGGUGAGGAAUGGAAAAGUUUUAAGAAUAUUAAUAGACACCGGUUCAA .....................((((((((((..((((.....))))...))))))))))..................................... ( -7.22 = -8.23 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:07 2011