| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 888,299 – 888,401 |
| Length | 102 |
| Max. P | 0.633227 |
| Location | 888,299 – 888,401 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 69.25 |
| Shannon entropy | 0.55015 |
| G+C content | 0.46966 |
| Mean single sequence MFE | -26.11 |
| Consensus MFE | -17.10 |
| Energy contribution | -16.18 |
| Covariance contribution | -0.92 |
| Combinations/Pair | 1.65 |
| Mean z-score | -0.56 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 888299 102 - 2517507 ACGUGAAUUACAUCU--AGCGCUGGACGCGAAUCAGUUCAUGGUUGAACAGGUCACUGAGGCUAGUCAAAUU-AUACUUUGACAUGCCGGACGCAAC-CGAACUGA .((((.......(((--(....))))))))..(((((((..(((((..(((....))).(((..((((((..-....))))))..))).....))))-)))))))) ( -31.41, z-score = -2.28, R) >droSim1.chrU 7289640 103 + 15797150 GCCUUAACC-UAUCU--AACGCUGGACGCGAAUCGGUUCAUUGUUGAACAGGUCACUGAAAAAAGUCAAGCAAACGCUUCAACAUACUAGACGCCACACGAACCGA .........-.....--..(((.....)))..(((((((..((((((.(((....)))..........(((....))))))))).....(....)....))))))) ( -21.60, z-score = -0.87, R) >droYak2.chrU 1969204 104 - 28119190 ACGUGAAUCACAUCUAAAAUAGUUCAUUCGAAAUAGUUCAUUGUGGAAUAGGUCACUGAAGCUAGUCAAGCU-AUGCGUUGACACUCUGGGCGCCAC-GGAACUGU ..((((((.............)))))).....(((((((...((((..(((((((.((.((((.....))))-...)).))))...)))....))))-.))))))) ( -22.32, z-score = 0.46, R) >droEre2.scaffold_4845 1255613 98 - 22589142 AUGUGAAUCACAUCU--AGUGCUGGACGCGAAACAGUUCAUCGUGGAAUAGGUCAUUGAAGCUAGUCAAGAC------UUGACAUGCUGGACGCUACGGGAACUGA .......((.(.(((--(....)))).).))..((((((.((((((.....(((.....(((..((((....------.))))..))).))).)))))))))))). ( -26.90, z-score = -0.68, R) >droVir3.scaffold_13324 77974 104 - 2960039 GUGCGAGCUACAUGG-AAACGCUGGACGUGGAGCAGUUCA-CGUUGAAUAGGUCACUGAGGCAUGUCGAUCAUUUGCAUCGAUACGCUGAACGCCACUUGAACUGU ((((((.(((((((.-...)).))((((((((....))))-))))...))).)).....(((.((((((((....).))))))).)))....).)))......... ( -28.30, z-score = 0.58, R) >consensus ACGUGAAUCACAUCU__AACGCUGGACGCGAAACAGUUCAUCGUUGAAUAGGUCACUGAAGCUAGUCAAGCA_AUGCUUUGACAUGCUGGACGCCAC_CGAACUGA ...................(((.....)))..(((((((...((((..(((....))).(((..((((((.......))))))..))).....))))..))))))) (-17.10 = -16.18 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:06 2011