| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 866,834 – 866,928 |
| Length | 94 |
| Max. P | 0.998515 |
| Location | 866,834 – 866,928 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 66.67 |
| Shannon entropy | 0.46356 |
| G+C content | 0.50709 |
| Mean single sequence MFE | -34.51 |
| Consensus MFE | -26.33 |
| Energy contribution | -26.57 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.38 |
| SVM RNA-class probability | 0.998515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 866834 94 + 2517507 CUUCUUUCCGCGCUUAAUUCACAGUUUAAUGGCCUUAAGCUAUUAGAUGAAUCUCCAAAGCGCAAAAAAGCCGCUAGUGGUAGACUGCCUAAGG .......((((((((........((((((((((.....)))))))))).........))))))......((((....))))...........)) ( -23.13, z-score = -1.01, R) >dp4.Unknown_group_192 187 94 + 16232 CGGCUUCUAGCUAUGGAGUCUCAAUUUGGCAGUCUGCAACUGCUGAAUGAGUCUCCGAGGCGCAAAAAGGUCACUCCGCGUGAUCUGCAAGUGC .........(((.(((((.((((.((..(((((.....)))))..)))))).))))).)))(((...(((((((.....))))))).....))) ( -39.10, z-score = -3.52, R) >droPer1.super_118 16682 94 + 115424 CGGCUCCUAGCCAUGGAGGCUCAGUUUAGCGGUUUAAAACUGCUGAAUGAGUCUCCGAGGCGCAAAAAGGUCACUCCGCGGGAUCUGCAAGUGC (((.((((.(((.((((((((((.(((((((((.....))))))))))))))))))).))).......((.....))..)))).)))....... ( -41.30, z-score = -3.63, R) >consensus CGGCUUCUAGCCAUGGAGUCUCAGUUUAGCGGUCUAAAACUGCUGAAUGAGUCUCCGAGGCGCAAAAAGGUCACUCCGCGUGAUCUGCAAGUGC .........(((.(((((.((((.(((((((((.....))))))))))))).))))).)))(((....((((((.....)))))))))...... (-26.33 = -26.57 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:05 2011