| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,233,020 – 6,233,111 |
| Length | 91 |
| Max. P | 0.970112 |
| Location | 6,233,020 – 6,233,111 |
|---|---|
| Length | 91 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 68.49 |
| Shannon entropy | 0.63151 |
| G+C content | 0.49124 |
| Mean single sequence MFE | -27.88 |
| Consensus MFE | -13.59 |
| Energy contribution | -13.88 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.970112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6233020 91 + 23011544 -----AGGGCGCUU--CCCGAAAUGUGAGCCGUGGCAAAUUGCAUAGAA--UGUAUGUAAAAGUUGCAUUUGCAGCUGCUGCCACUCCAUGCAACGCCCC-------- -----.(((((((.--.(......)..))).((((((..(((((((...--..))))))).((((((....))))))..))))))..........)))).-------- ( -33.20, z-score = -2.62, R) >droEre2.scaffold_4929 15158643 88 + 26641161 -----AGAGGGUUU--UCCGAAAUGUGAGCCGUGGCAAAUUGCAUAGAA--UGUAUGUAAAAGUUGCAUUUGCAGCUGCUGCCACUCCACGCCCCUC----------- -----.(((((...--........(((.(..((((((..(((((((...--..))))))).((((((....))))))..))))))..).))))))))----------- ( -29.00, z-score = -2.45, R) >droYak2.chr2L 15648589 91 - 22324452 -----GGGGGGUUU--CCCGAAAUGUGAGUCGUGGCAAAUUGCAUAGAA--UGUAUGUAAAAGUUGCAUUUGCAGCUGCUGCCACUCCACGCCCUAACCC-------- -----((((((...--))).....((((((.(..((...(((((((...--..))))))).((((((....))))))))..).))).))).)))......-------- ( -31.50, z-score = -2.11, R) >droSec1.super_5 4304548 91 + 5866729 -----AGGGCGCUU--CCCGAAAUGUGAGCCGUGGCAAAUUGCAUAGAA--UGUAUGUAAAAGUUGCAUUUGCAGCUGCUGCCACUCCAUGCACCGCCCC-------- -----.(((((((.--.(......)..))).((((((..(((((((...--..))))))).((((((....))))))..))))))..........)))).-------- ( -33.20, z-score = -2.64, R) >droSim1.chr2L 6029794 91 + 22036055 -----AGGGCGCUU--CCCGAAAUGUGAGCCGUGGCAAAUUGCAUAGAA--UGUAUGUAAAAGUUGCAUUUGCAGCUGCUGCCACUCCAUGCACCGCCCC-------- -----.(((((((.--.(......)..))).((((((..(((((((...--..))))))).((((((....))))))..))))))..........)))).-------- ( -33.20, z-score = -2.64, R) >droPer1.super_5 6690073 90 + 6813705 GGGGGCAGAAGUUG-GAUG-AAAUGUGAGCCAUGGCAAAUUGCAUAGAA--UGUAUGUAAAAGUUGCAGUUGCAGCUGCUGCUGCUGCUGCCAC-------------- ((.(((((.(((((-(...-.........))).(((...(((((((...--..))))))).((((((....)))))))))))).))))).))..-------------- ( -29.20, z-score = -0.75, R) >droWil1.scaffold_180708 7437833 84 + 12563649 -------GGAGAUGGUUGUGAAAUGUGAGUCCAGGCAAAUUGCAUAGAGAAUGUAUGUAAAAGUUGCAGUUUCAGCUGCUAUCUCUCCCUC----------------- -------(((((((((.(((((((.((....)).((((.(((((((.......)))))))...)))).)))))).).))))))))).....----------------- ( -23.00, z-score = -1.80, R) >droGri2.scaffold_15252 2595973 101 + 17193109 ---GUGGUACAGUGAGGAUGAAAUGUGAGCCACGCCAAAUUGCAUAGAA----UGUGUAAAAGUUGCAGCUGCAGCUGCUGCCUGUCCCGUUUUUGUGCCCAGUCCUA ---(.(((((((((.((((....................((((((....----.))))))..((.(((((....))))).))..))))))...))))))))....... ( -25.40, z-score = 0.22, R) >droMoj3.scaffold_6500 13286839 90 + 32352404 ------------GGAGGUUGAAAUGUGAGCCACGGCAAAUUGCAUAGAA----UGUGUAAAAGUUGCAGUUGCAGCUGCUGCCUGUACCGUUUU-GUGCUUAGUCCC- ------------(((((((........))))..........((((((((----((.(((...((.(((((....))))).))...)))))))))-))))....))).- ( -28.40, z-score = -1.78, R) >droVir3.scaffold_12963 2982228 91 + 20206255 ------------GGAGGUUGAAAUGUGAGCCACGCCAAAUUGCAUAAAA----UGUGUAAAAGUUGCAGUUGCAGCUGCUGCCUGUCCCGUUUU-AUGCCUAGUCCCC ------------(((((((........))))..........((((((((----((.(((..((((((....))))))..)))......))))))-))))....))).. ( -24.10, z-score = -1.61, R) >droAna3.scaffold_12916 7975706 84 + 16180835 -----AGGAAGUUGCGACGGAAAUAUAAGCCACGGCAAAUCGCAUAGAA--UGUAUGUAAAAGAUGCAAUUUCAGCUGCUGCCGCCAUCCC----------------- -----..(((((((((.(..........((....)).....(((((...--..)))))....).))))))))).((....)).........----------------- ( -16.50, z-score = 0.70, R) >consensus _____AGGGCGUUG__CCCGAAAUGUGAGCCAUGGCAAAUUGCAUAGAA__UGUAUGUAAAAGUUGCAGUUGCAGCUGCUGCCACUCCAGGCAC_GC_CC________ .................................((((..(((((((.......))))))).((((((....))))))..))))......................... (-13.59 = -13.88 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:47 2011