| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 776,638 – 776,773 |
| Length | 135 |
| Max. P | 0.727655 |
| Location | 776,638 – 776,773 |
|---|---|
| Length | 135 |
| Sequences | 3 |
| Columns | 135 |
| Reading direction | reverse |
| Mean pairwise identity | 54.57 |
| Shannon entropy | 0.64425 |
| G+C content | 0.46508 |
| Mean single sequence MFE | -33.20 |
| Consensus MFE | -11.53 |
| Energy contribution | -12.10 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.727655 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 776638 135 - 2517507 UCAUCGAACCAAGCUGAUUUAUGUUCGACCAGGGAGCGAUGUAAAACACACUUUGCUCUGUUCCAAUCCGCUUCGUCCAGCGGGUGGCGAGAGCUCAUCCAUCUUUUGCGUAAACGCCUCAACUCAGCUAUUAGG ...........((((((......((((.((..((((((..(((((......)))))..)))))).(((((((......)))))))))))))................(((....)))......))))))...... ( -37.60, z-score = -1.10, R) >droSec1.super_1183 3347 123 - 5550 UCAUCAAACCAAGCUGAUUUAUG------------AUGAUGUAAAACACACUUUGUUCUGUUUCAAUCCGCUUUGUACAGCGGGUGGCGAGACCUCAUCCAUAUUUUGCGUAAACGCCUCUUCUCAGCUAUAAGG ...........((((((..((((------------((((.....((((.....))))..(((((.(((((((......)))))))...))))).)))).))))....(((....)))......))))))...... ( -29.20, z-score = -1.53, R) >droEre2.scaffold_3194 258 126 - 7641 ---------CGAGGCGACAUAACCUUCAGCAACAAGUUACGCAACCGGCCACCUGCCGAAUGAUAACUAGCCAAAUAUAUUGGAAGGCUAGAGCUCAUCCAGAUUAUUCAGCUAUGCAGAAGUUUAGACGACCGG ---------...((((...(((.((((.(((...(((((..((..((((.....))))..)).)))))(((..((((..(((((.(((....)))..)))))..))))..))).))).)))).)))..)).)).. ( -32.80, z-score = -2.23, R) >consensus UCAUC_AACCAAGCUGAUUUAUG_U__A_CA___AGUGAUGUAAAACACACUUUGCUCUGUUACAAUCCGCUUAGUACAGCGGGUGGCGAGAGCUCAUCCAUAUUUUGCGUAAACGCCUCAACUCAGCUAUAAGG ...........((((((..................(((..(((((......)))))..)))....................(((((((....)).))))).......(((....)))......))))))...... (-11.53 = -12.10 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:48:03 2011