| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 733,834 – 733,951 |
| Length | 117 |
| Max. P | 0.509777 |
| Location | 733,834 – 733,951 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 77.68 |
| Shannon entropy | 0.39738 |
| G+C content | 0.52301 |
| Mean single sequence MFE | -39.72 |
| Consensus MFE | -19.52 |
| Energy contribution | -22.44 |
| Covariance contribution | 2.92 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 733834 117 - 2517507 GAGGGUCGUGUCGCAAACAGU-CCUCACGACAUUCGUUGGGGGACUGCUGGGAAACCUCGGGGGUAUAGUCAGAGCCUGGAGGCCGCAAGACCUCGAAGAAGCGUAUGACGUAGCCAU- ....((((((.(((...((((-((((.((((....))))))))))))..((....))((((((...........(((....)))(....).))))))....)))))))))........- ( -46.80, z-score = -1.98, R) >droSim1.chrU 12229489 116 + 15797150 GAAGGUCGUUUCGCAAACAGU-CCUCACGACAUUCGUUGGGAGACUGC-GGAAAACCUCGGUGGUAUAGUCAGAGCAUGGAGGCCGCAAGACCUCGAAGAAGCUUAUGACAUAGCCAU- ((.(((..(((((((....((-(((((((.....)).)))).))))))-)))).))))).(((((...((((((((.(.((((.(....).)))).)....)))).))))...)))))- ( -40.20, z-score = -2.43, R) >droYak2.chrU 17478533 113 - 28119190 ----GUCGUUUCGCAAACAGU-CCUCACGACAUUUCUUGGGGGACUGCGGGGAAACCUCGGUGGUAUAGUCAGAGCCUGGAGGCCGCAAGACCUCGAAGAAGCUUAUGACGUAGCCAU- ----(..(((((.(...((((-((((.(((......)))))))))))..).)))))..).(((((...((((((((((.((((.(....).))))..))..)))).))))...)))))- ( -44.00, z-score = -2.46, R) >droEre2.scaffold_4929 23986450 113 - 26641161 ----GUCGUUUCGCAAACAGU-CCUCACGACAUUCGUUGGGGGACUGCGGGGAAACCUCGGUGGUAUAGUCAGAGCCUGGAGGCCGCAAGAUCUCGAAGAAGCUUAUGACAUAGUCAU- ----......((((...((((-((((.((((....))))))))))))((((....)).))))))....((((((((((.(((..(....)..)))..))..)))).))))........- ( -41.80, z-score = -2.40, R) >droWil1.scaffold_181140 898088 119 + 1556085 AAGAAUUGUUUCUUAACCAAUGCCUAACCACUUUCCUGAAGGGACUUCGCGGACCUUUGGGUUCAAUAGUUCGAGGCAGAGACCCCACGGAUAUCGUUACAGCAUAUGAAAUAGCAAUU .....(((((((........(((((....(((..((..((((..(.....)..))))..))......)))...)))))((..((....))...))............)))))))..... ( -25.80, z-score = 0.06, R) >consensus _A__GUCGUUUCGCAAACAGU_CCUCACGACAUUCGUUGGGGGACUGCGGGGAAACCUCGGUGGUAUAGUCAGAGCCUGGAGGCCGCAAGACCUCGAAGAAGCUUAUGACAUAGCCAU_ .......(((((.(...((((.((((.((((....))))))))))))..).)))))....(((((...((((((((.(.((((.(....).)))).)....)))).))))...))))). (-19.52 = -22.44 + 2.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:59 2011