| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 730,506 – 730,563 |
| Length | 57 |
| Max. P | 0.756274 |
| Location | 730,506 – 730,563 |
|---|---|
| Length | 57 |
| Sequences | 4 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 69.01 |
| Shannon entropy | 0.50925 |
| G+C content | 0.63003 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -13.96 |
| Energy contribution | -13.53 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.752593 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 730506 57 + 2517507 UGCAGAAGUGCUGACCUGGCCUUCUGCCAGCAGUUCUGCUGCGGACCAGAGGCCUUG .(((((((.(((.....))))))))))..((((.....))))((.((...))))... ( -22.00, z-score = -0.88, R) >droSim1.chrU 5090733 57 - 15797150 CGCAGAAGUGCUGACCUGGCCUUCUGCCAGCGGUUCUGCUGCGGACCAGAGGCCUGG (((((.((.((((..(((((.....))))))))).)).)))))..((((....)))) ( -24.40, z-score = -1.07, R) >droSec1.super_83 98390 57 + 109685 UGCAGAACUGCUGACCUGGCCUUCUGCCAGCAGUUCUGCUGCGGACCAGAGGCCUGG .(((((((((((.....(((.....))))))))))))))......((((....)))) ( -25.30, z-score = -1.93, R) >droEre2.scaffold_4929 23729113 51 + 26641161 CGCAAAGUCGCUGACACGACGCCCAAUCGACCGCGCAGUCGAGAAUCCGAA------ ......((((......))))......(((((......))))).........------ ( -10.20, z-score = 0.47, R) >consensus CGCAGAAGUGCUGACCUGGCCUUCUGCCAGCAGUUCUGCUGCGGACCAGAGGCCUGG (((((....((((..(((((.....)))))))))....))))).............. (-13.96 = -13.53 + -0.44)
| Location | 730,506 – 730,563 |
|---|---|
| Length | 57 |
| Sequences | 4 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 69.01 |
| Shannon entropy | 0.50925 |
| G+C content | 0.63003 |
| Mean single sequence MFE | -21.83 |
| Consensus MFE | -15.31 |
| Energy contribution | -14.62 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.44 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.756274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 730506 57 - 2517507 CAAGGCCUCUGGUCCGCAGCAGAACUGCUGGCAGAAGGCCAGGUCAGCACUUCUGCA ...((((...))))....((((((.(((((((..........))))))).)))))). ( -22.30, z-score = -0.67, R) >droSim1.chrU 5090733 57 + 15797150 CCAGGCCUCUGGUCCGCAGCAGAACCGCUGGCAGAAGGCCAGGUCAGCACUUCUGCG ((((....))))....((((......))))(((((((((.......)).))))))). ( -21.60, z-score = -0.55, R) >droSec1.super_83 98390 57 - 109685 CCAGGCCUCUGGUCCGCAGCAGAACUGCUGGCAGAAGGCCAGGUCAGCAGUUCUGCA ((((....))))......((((((((((((((..........)))))))))))))). ( -29.40, z-score = -2.85, R) >droEre2.scaffold_4929 23729113 51 - 26641161 ------UUCGGAUUCUCGACUGCGCGGUCGAUUGGGCGUCGUGUCAGCGACUUUGCG ------.((((....))))..(((.(((((....(((.....)))..))))).))). ( -14.00, z-score = 0.88, R) >consensus CCAGGCCUCUGGUCCGCAGCAGAACUGCUGGCAGAAGGCCAGGUCAGCACUUCUGCA ...((((((((.....(((((....))))).))).)))))......(((....))). (-15.31 = -14.62 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:58 2011