| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 730,317 – 730,396 |
| Length | 79 |
| Max. P | 0.997029 |
| Location | 730,317 – 730,396 |
|---|---|
| Length | 79 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 69.15 |
| Shannon entropy | 0.54291 |
| G+C content | 0.52219 |
| Mean single sequence MFE | -24.05 |
| Consensus MFE | -15.72 |
| Energy contribution | -14.85 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.82 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.03 |
| SVM RNA-class probability | 0.997029 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 730317 79 - 2517507 UGCAAUUCAGCAG-UUUCACUCCG------------UGAGAACUGCUUGUGUUAUCUUCUCCGCCUUUUAAGAGGU---CGUCC-UGGUGACCCAC ........(((((-((((((...)------------)))).))))))((.((((((....(.(((((....)))))---.)...-.)))))).)). ( -22.30, z-score = -2.07, R) >droEre2.scaffold_4929 23728929 82 - 26641161 UGCAACUUGGCAA-UUUCGCAAUA------------UCUUCGUUGCGCGUGCUAACUCUUCCCUCCUUUAAAUGGUCGUCGUCC-CGGCGGCCUCC ......((((((.-...((((((.------------.....))))))..))))))..................((((((((...-))))))))... ( -23.70, z-score = -2.96, R) >droYak2.chr2L_random 731201 82 - 4064425 CGCAACUCGGCAG-UUUCACUCCG------------UGAAAACUGCUGGUGUUAACUCCUCCCUCCUUUAAGAGGUCGCCGUCU-CGGGGACCCGC .((((((((((((-((((((...)------------)).)))))))))).)))..................(.((((.(((...-))).))))))) ( -27.80, z-score = -1.88, R) >droSec1.super_83 98217 82 - 109685 UGCAAUUCAGCAG-UUUCACUCCG------------UGAGAACUGCUUGUGUUAACUUCUCCGCCUUUUAAGAGGUCGCCGUCC-CGGUGACCCAC .(((....(((((-((((((...)------------)))).))))))..)))...................(.((((((((...-))))))))).. ( -25.30, z-score = -2.68, R) >droSim1.chrU 5090541 82 + 15797150 UGCAAUUCAGCAG-UUUCACUCCG------------UGAGAACUGCUUGUGUUAACUUCUCCGCCUUUUAAGAGGUCGCCGUCC-CGGUGACCCAC .(((....(((((-((((((...)------------)))).))))))..)))...................(.((((((((...-))))))))).. ( -25.30, z-score = -2.68, R) >dp4.Unknown_group_54 47500 96 - 61718 AGCGAUAUUGCAGAUUUCACUCCGCCCAAUGGCCAAUUUGGUUAACAUUUGUUAACUACUCCCUCCUCCAAGACUUUGCUGUCCUCGGUAGAGCUC .(((....)))............(((....))).....((((((((....))))))))............((.((((((((....)))))))))). ( -19.90, z-score = -0.83, R) >consensus UGCAAUUCAGCAG_UUUCACUCCG____________UGAGAACUGCUUGUGUUAACUUCUCCCCCCUUUAAGAGGUCGCCGUCC_CGGUGACCCAC .(((....(((((.(((((.................))))).)))))..)))...................(.((((((((....))))))))).. (-15.72 = -14.85 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:56 2011