| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,230,702 – 6,230,812 |
| Length | 110 |
| Max. P | 0.870258 |
| Location | 6,230,702 – 6,230,812 |
|---|---|
| Length | 110 |
| Sequences | 8 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 56.56 |
| Shannon entropy | 0.87891 |
| G+C content | 0.44386 |
| Mean single sequence MFE | -29.32 |
| Consensus MFE | -9.63 |
| Energy contribution | -7.90 |
| Covariance contribution | -1.73 |
| Combinations/Pair | 2.50 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6230702 110 - 23011544 AAUAAUUGCUGCUUUUCAACUGCAAUC-UGCCUAUUCAGUUGCCCCACUCAUUUCAUCAGAGAGCGUU-AAAAACCGAACUGCAUAGAUUGGUGGGAUGGAG--CAGCUCUCAA .......((((((((.((((((.(((.-.....))))))))).((((((.((((...(((....((..-......))..)))...)))).))))))..))))--))))...... ( -29.50, z-score = -1.13, R) >droEre2.scaffold_4929 15155829 110 - 26641161 AAUAAUUACAGCUCUUCAGCUGCACUC-CGCCCUUGUAGUUGCCCCAUUCAUUCCAUCAGAGAGCGUU-AAAAACCGAACUGCAUAGAUGGGCGGGGUGGAG--CAGCUUCCAA .........((((.....(((.(((((-(((((.(((((((..........(((.....)))..((..-......))))))))).....)))))))))).))--)))))..... ( -34.70, z-score = -1.73, R) >droYak2.chr2L 15646372 91 + 22324452 --------------------AAUAAUUACAGCUUUUCAUUUGCCCCACUCAUUUCAUCAGAGAGCGUU-AAAAACCGAACAGCAUAGAUGGAUGGAAUGGAG--AAGCUCGCAA --------------------.........((((((((....(.....).(((((((((.....(((((-........))).)).......))))))))))))--)))))..... ( -17.90, z-score = -0.58, R) >droSec1.super_5 4302211 110 - 5866729 AAUAAUUGCUCCUUUUCAACUGCAAUU-UGCCUUCGCAGUUGCCCCACUCAUUUCAUCAGAGAGCGUU-AAAAACCGAACUGCAUAGAUUGGUGGGAUGGAG--CAGCUCUCAA .....(((((((....(((((((....-.......))))))).((((((.((((...(((....((..-......))..)))...)))).))))))..))))--)))....... ( -32.10, z-score = -2.00, R) >droSim1.chr2L 6027527 110 - 22036055 AAUAAUUGCUGCUUUUCAACUGCAAUC-UGCCUUUGCAGUUGCCCCACUCAUUUCAUCAGAGAGCGUU-AAAAACCGAACUGCAUAGAUUGGUGGGAUGGAG--CAGCUCUCAA .......((((((((.(((((((((..-.....))))))))).((((((.((((...(((....((..-......))..)))...)))).))))))..))))--))))...... ( -35.90, z-score = -2.59, R) >dp4.chr4_group5 119156 113 + 2436548 AAUCCAUAUAUUUUCAUAGCGUUACUUUGAUCUCCAAAUAAUCAUAAUUCUCUUGCUCCGUCAUAGAG-UAUCUCCUCAAAACAGAGGUGGAGAAGGUGGGGGAAAACUUUCAA ...((........(((.((.....)).)))((((((.................(((((.......)))-))...((((......)))))))))).))((..((....))..)). ( -22.70, z-score = -0.24, R) >droPer1.super_5 117703 113 + 6813705 AAUCCAUAUAUUUUCAUAGUGUUACUUUGAUCUCCAAAUAAUCUUCAUUCUCCGUCUCCGUCAUAGAG-UAUCUCCUCAAAACAGAGGUGGAGAAGGUGGGGGAAAACUUUCAA .............(((.((.....)).)))(((((.....((((....(((((..(((.((....(((-......)))...)).)))..))))))))).))))).......... ( -25.10, z-score = -0.69, R) >droWil1.scaffold_180708 11695441 108 - 12563649 AAAAAAGAUACUUAUGCAUCGGCC----GGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUUGUUGGGUGGAU--CUGCCUAUAG ...............(((((((((----(((.......)))))((((((.((...)).)))).)).................)))))))....(((((....--..)))))... ( -36.70, z-score = -0.93, R) >consensus AAUAAUUACAGCUUUUCAACUGCAAUU_GGCCUUCGCAGUUGCCCCACUCAUUUCAUCAGAGAGCGUU_AAAAACCGAACUGCAUAGAUGGGUGGGAUGGAG__CAGCUCUCAA ................................................((((((((((((............................)))))))))))).............. ( -9.63 = -7.90 + -1.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:46 2011