| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 634,591 – 634,688 |
| Length | 97 |
| Max. P | 0.985409 |
| Location | 634,591 – 634,688 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 53.10 |
| Shannon entropy | 0.78679 |
| G+C content | 0.50799 |
| Mean single sequence MFE | -31.00 |
| Consensus MFE | -10.52 |
| Energy contribution | -11.65 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.58 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.20 |
| SVM RNA-class probability | 0.985409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 634591 97 + 2517507 AUGCAGAUUUAGCAUAAACAUCUGUUGGGGCCGUGUCUGGUUCCCAAUGGUCUUCCCAGUAUGGGGAAGUAUGCUGUUUCUGCUCGUGUCAGCACUU ..(((((..(((((((.....((((((((((((....))).))))))))).((((((......)))))))))))))..)))))..(((....))).. ( -41.70, z-score = -4.93, R) >droYak2.chrU 13842832 95 + 28119190 ACGCAGAUACAG-AUACACGCCUUUGGGGGCCGUGUCUGGUUCCCAUUGGU-UUCCCGGUAUGGGGAGAUAUGCUGUUUUUGCUAGUGUCAGCAUUU ..(((((.((((-(((...(((..(((((((((....)))))))))..)))-(((((......))))).))).)))).))))).((((....)))). ( -35.50, z-score = -2.34, R) >droAna3.scaffold_13767 841397 79 + 1685616 AUGUCGACUCAGCAUACCCGCCUUUGGGGGCCGUGCCUGGAUCCCACUGGU-UUCC-GGUAUCUUGCGAUCGUCAGCAUUU---------------- .((.((((.(((.(((((.(((..((((..(((....)))..))))..)))-....-))))).))).).))).))......---------------- ( -25.40, z-score = -0.61, R) >dp4.chr2 21807132 91 - 30794189 AUGCAGUUGCUGCAACUAAAUCUGAUGAAACUGU---UGGUCGCCCUGGACAUCUU---CAUCUGGGUCUGUGUCUAUUUCUACGCAGUCAGCGUCU .....((((((((......((((((((((..(((---(((....))..))))..))---)))).))))..(((........))))))).)))).... ( -21.40, z-score = -0.16, R) >consensus AUGCAGAUUCAGCAUACACACCUGUGGGGGCCGUGUCUGGUUCCCAUUGGU_UUCC_GGUAUCGGGAGAUAUGCUGUUUUUGCU_GUGUCAGCAUUU ..(((..............(((..((((((((......))))))))..))).(((((......)))))...)))....................... (-10.52 = -11.65 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:51 2011