| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 612,224 – 612,319 |
| Length | 95 |
| Max. P | 0.602793 |
| Location | 612,224 – 612,319 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 63.24 |
| Shannon entropy | 0.58709 |
| G+C content | 0.39238 |
| Mean single sequence MFE | -22.79 |
| Consensus MFE | -9.20 |
| Energy contribution | -9.82 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 612224 95 + 2517507 -------UACCUUCUU----UGAAGCAGGGAAGGUAACGCAUCAAUCGAAGUAAAUUCGUCAAC-GUUCUUAAUAUCUACGUAGAAAGGUUUCUUAGCCUAAAUCGA -------(((((((((----((...))))))))))).........((((..........((.((-((...........)))).)).(((((....)))))...)))) ( -22.10, z-score = -1.86, R) >droSim1.chr3h_random 100544 104 - 1452968 UACUUUUUAUUUAUUUGU--AGGAGCAGGGAAGGUCCCGCUCCAUUCGAAGUUAAUUCGUCAAU-AAUUUGGCGAUCUAAAUACAAUGGUUUCUUAGCCUAAGUCGA .((((.........((((--((((((.(((.....))))))))........(((..(((((((.-...)))))))..))).))))).((((....)))).))))... ( -29.10, z-score = -2.84, R) >droEre2.scaffold_4929 4411842 100 - 26641161 -------UACCUGCUCGUAGUGGAGCAGGGAAGGUCUCGCUCCAGUUGAAAUAUAUUCGUCAAUUGUUCUUAAAAUCUACAUACAAUGGCUUCUUAGACUAAAACGA -------..(((((((......)))))))...(((((..........(((.....)))((((.((((...............)))))))).....)))))....... ( -21.56, z-score = -0.64, R) >droYak2.chrU 12927631 77 + 28119190 --------------UUUC--UGGAGCUGGGAAGGUCCCGCUC-----AAAGUAAAUUUGUGAAU-AUCUUGGAGUUCUCCAUACAAAGGAUUUUUAGCC-------- --------------....--..((((.(((.....)))))))-----(((((...((((((...-....((((....))))))))))..))))).....-------- ( -18.41, z-score = -0.42, R) >consensus _______UACCU_CUUGU__UGGAGCAGGGAAGGUCCCGCUCCA_UCGAAGUAAAUUCGUCAAU_AUUCUGAAGAUCUACAUACAAAGGUUUCUUAGCCUAAAUCGA .....................(((((.(((.....))))))))...((((.....))))............................((((....))))........ ( -9.20 = -9.82 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:49 2011