| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 602,667 – 602,759 |
| Length | 92 |
| Max. P | 0.633118 |
| Location | 602,667 – 602,759 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 68.01 |
| Shannon entropy | 0.49624 |
| G+C content | 0.54698 |
| Mean single sequence MFE | -30.98 |
| Consensus MFE | -18.89 |
| Energy contribution | -19.07 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633118 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 602667 92 + 2517507 -----------GAUGGUAAUAUGUGUUCUGGAGUCCCUGCGGUACUACCGCGAGACUAUGCUUCGCAGGCCCAGGGUGCGCUCUGUGUUCCUUAGCUGGAUUU -----------...(((....((((......((((..(((((.....))))).))))......)))).)))(((((....)))))...(((......)))... ( -27.40, z-score = 0.36, R) >droYak2.chrU 7061816 90 + 28119190 -------------UAGUACAAGAAAUCCUGGAGUCCCUGCGGUACUACCGCGAGGCUAUGCUUCGCAGGGCCAGGAUGCGCUCCUUUUUCCCUUGCUAGGAUC -------------.......((..(((((((...((((((((.....))..(((((...))))))))))))))))))...))........(((....)))... ( -32.30, z-score = -1.37, R) >droSim1.chr2R 19214956 90 - 19596830 GGUGGUAUUGUGUGUUUGCGAAAAAUCCUGGAGUUACUGCGGUACUACCGCGAGGCUAUGCUUCGCAGGCCGAGGAUGCGCUCUCGAUUC------------- ((((((((((((((.((.((........)).)).))).)))))))))))(((((((...)))))))....(((((......)))))....------------- ( -32.10, z-score = -1.47, R) >droSec1.super_46 112637 90 - 322281 GGUGGUAUUGUGUGUUUGCGAAAAAUCCUGGAGUUACUGCGGUACUACCGCGAGGCUAUGCUUCGCAGGCCGAGGAUGCGCUCUCGAUUC------------- ((((((((((((((.((.((........)).)).))).)))))))))))(((((((...)))))))....(((((......)))))....------------- ( -32.10, z-score = -1.47, R) >consensus ___________GUGUGUACGAAAAAUCCUGGAGUCACUGCGGUACUACCGCGAGGCUAUGCUUCGCAGGCCCAGGAUGCGCUCUCGAUUC_____________ ........................(((((((.(((.....((.....))(((((((...))))))).)))))))))).......................... (-18.89 = -19.07 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:47 2011