| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 555,726 – 555,836 |
| Length | 110 |
| Max. P | 0.763632 |
| Location | 555,726 – 555,836 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 59.71 |
| Shannon entropy | 0.64228 |
| G+C content | 0.49261 |
| Mean single sequence MFE | -37.63 |
| Consensus MFE | -15.89 |
| Energy contribution | -16.70 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.763632 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 555726 110 - 2517507 UGUAGUGUCACUACUCAAAGGGCCGGAUAAGGACAGGAGUGAUCCAGCUUUUUACCGCGGUAUCUAUCUGUUGCUAGUUUUUUGCGAAGUGCUAGAGGGGAUCAUGGUGA---------- .......(((((((((....(.((......)).)..)))((((((..((((.((((((((...(((.(....).)))....)))))..)))..)))).))))))))))))---------- ( -26.50, z-score = 1.22, R) >droGri2.scaffold_15056 5235 120 - 38174 GGUGAUUGUGCUUUUGAAGUCGCCCGAUAGGGUCAGGAGCAAUCCUCGUUCCUUUCGGGGCAUCAGUCUCCUACCAGUGCUGGGUAAAGUGCUGGAAAGAGUCAUGGUAGAAAGGCUCCA ((.((((((((....(....).(((((.(((..(((((....)))).)..))).)))))))).))))).))..((((..((......))..))))...(((((..........))))).. ( -47.00, z-score = -2.64, R) >droVir3.scaffold_12943 155067 110 + 194972 AGUGAUAGUGCUCCUGAAGUCGCCUGACAGGAUCAGGAGCAAUCCUAGAUCUUUUCGGGGCAUCAGUCUUCUUCCGGUUCUUGGAAAAGUUCUGGAAAGGAUUAUGGUAG---------- .......((((.(((((((((....)))((((((((((....)))).)))))))))))))))).((((((.((((((..(((....)))..)))))))))))).......---------- ( -41.50, z-score = -2.84, R) >triCas2.chrUn_189 4800 110 + 17233 AGAGGUAUUGUUGUUGAAAGGGAGUGACAAGGACAGGACACUUCCCAGGUCAUACAGGGCGAUAUGCCUCCUGCCUGUUUUUGGGAAGGUCCUUGAGACAAUGGUGGUAG---------- ...(.(((..(((((..(((((..(..((((((((((........((((.......((((.....))))))))))))))))))..)...)))))..)))))..))).)..---------- ( -35.51, z-score = -0.88, R) >consensus AGUGAUAGUGCUACUGAAAGCGCCUGACAAGGACAGGAGCAAUCCUAGUUCUUACCGGGGCAUCAGUCUCCUGCCAGUUCUUGGAAAAGUGCUGGAAAGAAUCAUGGUAG__________ ........((((.........((((((.((((((((((....)))).)))))).)).))))............((((..(((....)))..))))..........))))........... (-15.89 = -16.70 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:43 2011