| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,222,873 – 6,222,945 |
| Length | 72 |
| Max. P | 0.878052 |
| Location | 6,222,873 – 6,222,945 |
|---|---|
| Length | 72 |
| Sequences | 6 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 76.05 |
| Shannon entropy | 0.46873 |
| G+C content | 0.50608 |
| Mean single sequence MFE | -21.68 |
| Consensus MFE | -9.35 |
| Energy contribution | -9.22 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6222873 72 - 23011544 ACGCGCUGCUGUCAGAGAGAUCCCUUUUCCUCGACGGCUUUACCCGAAAACCCGUCAUUAGAGGGUAGCUAC ....((((((.((.(((.((.......)))))(((((.(((......))).)))))....)).))))))... ( -24.30, z-score = -2.59, R) >droAna3.scaffold_12916 8197061 58 + 16180835 ------UAUCACCAGAGAAAC----AUCCUUGGGCUUCCCUGCAAGAGA----GUCUUUAAAGGAUAACAAC ------...............----(((((((((((..(......)..)----))))...))))))...... ( -10.90, z-score = -0.55, R) >droEre2.scaffold_4929 15149514 70 - 26641161 ACGCGCUGCUGUCAGAGA-ACUCC-UUUCCCAGACUGCUUUUCCGGAAAAGCCGUCAUUAGAGGGUAGCUAC ....((((((.((.((((-.....-))))...(((.((((((....)))))).)))....)).))))))... ( -22.80, z-score = -1.79, R) >droYak2.chr2L 15638310 71 + 22324452 ACGCGCUGCUGUCAGUGA-ACUCCUUUUUCUCGACUGCUAUUCGAGAAAACCCGUCAUUAGAGGGUAGCUAC ....((((((.(((((((-......(((((((((.......)))))))))....))))).)).))))))... ( -25.10, z-score = -3.35, R) >droSec1.super_5 4294421 71 - 5866729 AUGCGCUGCUGUCAGAGA-ACUCCUUUUCCUCGACGGCUUUUCCCGAAAACCCGUCAUUAGAGGGUAGCUAC ....((((((.((.(((.-..........)))(((((.((((....)))).)))))....)).))))))... ( -23.50, z-score = -2.62, R) >droSim1.chr2L 6018156 71 - 22036055 AUGCGCUGCUGUCAGAGA-ACUCCUUUUCCUCGACGGCUUUUCCCGAAAACCCGUCAUUAGAGGGUAGCUAC ....((((((.((.(((.-..........)))(((((.((((....)))).)))))....)).))))))... ( -23.50, z-score = -2.62, R) >consensus ACGCGCUGCUGUCAGAGA_ACUCCUUUUCCUCGACGGCUUUUCCCGAAAACCCGUCAUUAGAGGGUAGCUAC ....((((((.((.((((.......)))).....(((......)))..............)).))))))... ( -9.35 = -9.22 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:45 2011