| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 545,551 – 545,645 |
| Length | 94 |
| Max. P | 0.816246 |
| Location | 545,551 – 545,645 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 55.56 |
| Shannon entropy | 0.61664 |
| G+C content | 0.53606 |
| Mean single sequence MFE | -24.33 |
| Consensus MFE | -13.84 |
| Energy contribution | -14.18 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.28 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.816246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 545551 94 + 2517507 ---UGUGACCAUCUCGUAGCGAAGACAUCCUGGCCGGGCUGCGUCUGAGAACUGUUGGUUGCUGGUUCCCUCCGUGGCGCUUGAAACCA-CAUCGCUG ---.............((((((((((..(((....)))....))))......(((.((((...(((.((......)).)))...)))))-)))))))) ( -22.00, z-score = 2.19, R) >droSec1.super_51 136614 92 - 201256 UCUAGAAUUCACUUAAUGUGGCAUUCGUAUCUGUCUGCUGAUGUCGCAGCGGUCUUGGCUGCU----CCUCUGAUCUCCCUUGCGGCCUUCAUCUG-- ....((((((((.....)))).))))......(.((((((......)))))).)..((((((.----...............))))))........-- ( -24.69, z-score = -1.75, R) >droSim1.chrU 10350527 82 + 15797150 UCUAGAAUUCACUUAAUGUGGCAUUCGUAUCUGUCUGCUGAUGUCGCAGCGGUCUUGGCUGCU----CC----------CUUGCGGCCUUCAUCUG-- ....((((((((.....)))).))))......(.((((((......)))))).)..((((((.----..----------...))))))........-- ( -26.30, z-score = -2.80, R) >consensus UCUAGAAUUCACUUAAUGUGGCAUUCGUAUCUGUCUGCUGAUGUCGCAGCGGUCUUGGCUGCU____CC_____U__C_CUUGCGGCCUUCAUCUG__ ................(((((((((.(((......))).)))))))))........((((((....................)))))).......... (-13.84 = -14.18 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:41 2011