| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 410,887 – 410,973 |
| Length | 86 |
| Max. P | 0.943184 |
| Location | 410,887 – 410,973 |
|---|---|
| Length | 86 |
| Sequences | 4 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 81.47 |
| Shannon entropy | 0.30144 |
| G+C content | 0.61411 |
| Mean single sequence MFE | -31.65 |
| Consensus MFE | -25.52 |
| Energy contribution | -26.90 |
| Covariance contribution | 1.38 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.943184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 410887 86 - 2517507 -CCGCAAUAACCUCGAACCACACUCGGCGACAACGUCGCGACUCAUCGUCGUGCAGCUAGACAGGCUACGCAUCGUUGUCGCCCCGC -..((.........((.......))((((((((((..(((((.....)))..(.((((.....)))).)))..))))))))))..)) ( -28.80, z-score = -1.98, R) >droYak2.chrU 11905235 86 + 28119190 UAUACGA-AACAACGAACCACACUCGGCGGCAACGUCGCGACGCAUCGUCGCGCAACUAAACAGGCGACGCGUCGUUGUCGCCCCGC .......-.................((((((((((.(((((....))(((((............)))))))).)))))))))).... ( -31.90, z-score = -1.56, R) >droEre2.scaffold_4929 2419920 79 + 26641161 --------AAACUCGAACCACACUCGGCGGCAACGUCGCGACGCAUCGUCAUGAAAAUAGACAGGCGACGCGUCGUUGUCGCCCCGC --------.................((((((((((.((((.(((...(((((....)).)))..))).)))).)))))))))).... ( -35.80, z-score = -3.79, R) >droSim1.chrU 9320704 86 + 15797150 -CCGCAAUUACCUGGAACCACACUCGGGGACAAGGUCGCGACGCAUCGUCGUGCAGCUUGACAGGUGACGCAUCGUUGUCGCCCCGA -(((........)))........((((((.((((.((((((((...))))))).).))))...((..(((...)))..)).)))))) ( -30.10, z-score = -0.31, R) >consensus _CCGCAA_AACCUCGAACCACACUCGGCGACAACGUCGCGACGCAUCGUCGUGCAACUAGACAGGCGACGCAUCGUUGUCGCCCCGC .........................((((((((((.((((.(((...(((.........)))..))).)))).)))))))))).... (-25.52 = -26.90 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:39 2011