| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 310,618 – 310,668 |
| Length | 50 |
| Max. P | 0.708327 |
| Location | 310,618 – 310,668 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 97.33 |
| Shannon entropy | 0.03673 |
| G+C content | 0.34667 |
| Mean single sequence MFE | -6.70 |
| Consensus MFE | -6.70 |
| Energy contribution | -6.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.02 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.708327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 310618 50 + 2517507 GCUUCAAUCAAAAACUGCAUCGAUCAGCAUAAUUGAAUUUCACAAUGCAG ..............((((((.((....((....))....))...)))))) ( -6.70, z-score = -0.77, R) >droSim1.chrU 7982749 50 - 15797150 GUAUCAAUCAAAAACUGCAUCGAUCAGCAUAAUUGAAUUUCACAAUGCAG ..............((((((.((....((....))....))...)))))) ( -6.70, z-score = -1.14, R) >droSec1.super_142 8506 50 - 54358 GUAUCAAUCAAAAACUGCAUCGAUCAGCAUAAUUGAAUUUCACAAUGCAG ..............((((((.((....((....))....))...)))))) ( -6.70, z-score = -1.14, R) >consensus GUAUCAAUCAAAAACUGCAUCGAUCAGCAUAAUUGAAUUUCACAAUGCAG ..............((((((.((....((....))....))...)))))) ( -6.70 = -6.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:37 2011