| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 254,615 – 254,667 |
| Length | 52 |
| Max. P | 0.985324 |
| Location | 254,615 – 254,667 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 65.06 |
| Shannon entropy | 0.48177 |
| G+C content | 0.52103 |
| Mean single sequence MFE | -11.85 |
| Consensus MFE | -5.63 |
| Energy contribution | -5.30 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.20 |
| SVM RNA-class probability | 0.985324 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 254615 52 + 2517507 -----UUGUGGCCUGUGUUAACUCCCCCCCACCACAAGAUCUGCGUCCCGCAGAUCA -----((((((....................))))))((((((((...)))))))). ( -16.85, z-score = -4.12, R) >droWil1.scaffold_181148 1631755 57 + 5435427 GUGUGAGGAUGAGUGUGCUAACUCCUCCCCCCUCAAAAAUUGUCGUCCCGGAGAUCC ......((((((((......))))((((..(..((.....))..)....)))))))) ( -9.60, z-score = -0.27, R) >droMoj3.scaffold_6498 348625 52 - 3408170 -----UUGUCGAAAGUCUUAACUCUUCCCCAUCUAAAUAUCUGCGUCCCGCAGAUCA -----..(.(....).).....................(((((((...))))))).. ( -9.10, z-score = -3.36, R) >consensus _____UUGUCGAAUGUGUUAACUCCUCCCCACCAAAAAAUCUGCGUCCCGCAGAUCA ......................................(((((((...))))))).. ( -5.63 = -5.30 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:36 2011