| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 184,261 – 184,368 |
| Length | 107 |
| Max. P | 0.976692 |
| Location | 184,261 – 184,368 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 67.90 |
| Shannon entropy | 0.52058 |
| G+C content | 0.56174 |
| Mean single sequence MFE | -40.40 |
| Consensus MFE | -22.35 |
| Energy contribution | -22.85 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.976692 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 184261 107 + 2517507 -GGUGAACAUCCAUCGCGCCAAGGCGGCAUCGGCCGUGCUGGCAAAGAUGUUCACCAAGCAACAUCUUGAACUAGCCCUGGUACAGGAACCCUGG-UAAAACCAGGAAA -((((((((((......((((..(((((....)))))..))))...))))))))))........(((((.((((....)))).)))))..(((((-.....)))))... ( -46.80, z-score = -4.63, R) >droYak2.chrU 11156958 107 + 28119190 -GCUCAAUCUUUAUAAAAGCAAGAUCGCGUCGGCGGAACUCCUCAUCGCCCUGGAGCAAGGGUCCGCCGACAUAGCUUUGGUCCAAGAGCCAUGGAUUGCCUCGGCCA- -(((((((((........((......))(((((((((.(.(((..((......))...)))))))))))))...(((((......)))))...))))))....)))..- ( -34.50, z-score = -0.47, R) >droPer1.super_71 105377 107 - 336448 -ACUCAAUAUCCAUAAAAGCAAGGUAGCGUCGGCGGAGCUCCUCAUUGCCAUGGAGCAGGGGCCCGCCGACAUAGCUUUAGUCCAGGAGCCGUGGAUUGCGUCAGGCA- -.......((((((....((......))((((((((.((((((....((......))))))))))))))))...(((((......))))).))))))(((.....)))- ( -39.80, z-score = -1.44, R) >dp4.Unknown_group_315 4312 108 + 18952 AACUCUAUCUCCAUAAAAGCAAGGUAGCGUCGGCGGAGCUCCUCAUUGCCAUGGAGCAGGGGCCCGCCGACAUAGCUUUAGUCCAGGAGCCGUGGAUUGCGUCAGGCA- ....((((((...........)))))).((((((((.((((((....((......))))))))))))))))...((((((((((((....).)))))))....)))).- ( -40.50, z-score = -1.24, R) >consensus _ACUCAAUAUCCAUAAAAGCAAGGUAGCGUCGGCGGAGCUCCUCAUUGCCAUGGAGCAGGGGCCCGCCGACAUAGCUUUAGUCCAGGAGCCGUGGAUUGCGUCAGGCA_ .........(((.......((((((...((((((((.((((((.....(....)...))))))))))))))...)))))).....)))(((.(((......)))))).. (-22.35 = -22.85 + 0.50)
| Location | 184,261 – 184,368 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 67.90 |
| Shannon entropy | 0.52058 |
| G+C content | 0.56174 |
| Mean single sequence MFE | -39.35 |
| Consensus MFE | -19.91 |
| Energy contribution | -21.35 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 184261 107 - 2517507 UUUCCUGGUUUUA-CCAGGGUUCCUGUACCAGGGCUAGUUCAAGAUGUUGCUUGGUGAACAUCUUUGCCAGCACGGCCGAUGCCGCCUUGGCGCGAUGGAUGUUCACC- ..(((((((....-.((((...)))).)))))))...................(((((((((((.((((((..((((....))))..))))))....)))))))))))- ( -42.80, z-score = -2.71, R) >droYak2.chrU 11156958 107 - 28119190 -UGGCCGAGGCAAUCCAUGGCUCUUGGACCAAAGCUAUGUCGGCGGACCCUUGCUCCAGGGCGAUGAGGAGUUCCGCCGACGCGAUCUUGCUUUUAUAAAGAUUGAGC- -((((((((((........)).))))).)))..(((..(((((((((((((((((....)))...)))).).))))))))).(((((((.........))))))))))- ( -45.30, z-score = -3.01, R) >droPer1.super_71 105377 107 + 336448 -UGCCUGACGCAAUCCACGGCUCCUGGACUAAAGCUAUGUCGGCGGGCCCCUGCUCCAUGGCAAUGAGGAGCUCCGCCGACGCUACCUUGCUUUUAUGGAUAUUGAGU- -..((.((.((((((((.(....)))))....(((...(((((((((((((((((....))))..).)).)).)))))))))))...)))).))...)).........- ( -34.60, z-score = -0.46, R) >dp4.Unknown_group_315 4312 108 - 18952 -UGCCUGACGCAAUCCACGGCUCCUGGACUAAAGCUAUGUCGGCGGGCCCCUGCUCCAUGGCAAUGAGGAGCUCCGCCGACGCUACCUUGCUUUUAUGGAGAUAGAGUU -(((.....))).((((.(....)))))(((...(((((((((((((((((((((....))))..).)).)).))))))))((......))....))))...))).... ( -34.70, z-score = -0.09, R) >consensus _UGCCUGACGCAAUCCACGGCUCCUGGACCAAAGCUAUGUCGGCGGGCCCCUGCUCCAUGGCAAUGAGGAGCUCCGCCGACGCUACCUUGCUUUUAUGGAGAUUGAGC_ .........((((((((.(....)))))....(((...(((((((((((((((((....))))...))).)).)))))))))))...)))).................. (-19.91 = -21.35 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:36 2011