| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 184,127 – 184,222 |
| Length | 95 |
| Max. P | 0.593851 |
| Location | 184,127 – 184,222 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 65.28 |
| Shannon entropy | 0.55130 |
| G+C content | 0.60181 |
| Mean single sequence MFE | -28.52 |
| Consensus MFE | -12.02 |
| Energy contribution | -11.59 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 184127 95 - 2517507 -CCAGAUCACCAUCCGCCGGUACCGCUUCUUCCUUACACAGCAGGACUAGUUCCAUGCCUAGCUCCUAAGAGGAUAUCGGGGUCUGAUCCCCUAUC---- -...(((((....((.(((((((((((............)))((((((((........)))).))))....)).))))))))..))))).......---- ( -26.20, z-score = -1.02, R) >droYak2.chrU 11156807 90 - 28119190 GUCAGGUCACCGUCCUC---CUCGUCCGCC---UCGUCCAGCGAAAG----UCCCUGGGCGGCGUCCACGAUGGUUUCCGGACCUAGGUCCUUCUCCACC ....((..((((((...---..((.(((((---(.(....((....)----)..).)))))))).....))))))..))((((....))))......... ( -33.50, z-score = -2.28, R) >droPer1.super_71 105223 93 + 336448 GUCAGGUCACCGUCCUC---UUCCUUCUCCGAGUCGUCCAGCGCAAC----ACCAUGGGCGGCCUCAACUAUGGUCUCCAGACCUAGGUCCUUCUCGACC ....((((.........---..........((((((((((.......----....))))))).)))..(((.((((....))))))).........)))) ( -26.00, z-score = -1.23, R) >dp4.Unknown_group_315 4159 93 - 18952 GUCAGGUCACCGUCCUA---UUCCUUCUCCGAGUCGUCCAGCGCAAG----ACCAUGGGCGGCCUCCACUAUGGUCUCCAGACCUAGGUCCUUCUCGACC ....((((.........---..........((((((((((.(....)----....))))))).)))..(((.((((....))))))).........)))) ( -28.40, z-score = -1.41, R) >consensus GUCAGGUCACCGUCCUC___UUCCUCCUCCGAGUCGUCCAGCGCAAC____ACCAUGGGCGGCCUCCACGAUGGUCUCCAGACCUAGGUCCUUCUCGACC ...(((((..........................((((((...............))))))(((........))).....)))))............... (-12.02 = -11.59 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:34 2011