| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,220,112 – 6,220,212 |
| Length | 100 |
| Max. P | 0.734049 |
| Location | 6,220,112 – 6,220,212 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 89.60 |
| Shannon entropy | 0.20310 |
| G+C content | 0.40206 |
| Mean single sequence MFE | -27.55 |
| Consensus MFE | -19.10 |
| Energy contribution | -21.18 |
| Covariance contribution | 2.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6220112 100 + 23011544 CGCUUCACGAAAUUCGCUUUGUGUGCGUCCUGUAAUGAAAAAUUGUGCAAAUCUGCAUAAAGGCAAAAGCAAACAGCAAAACCAAAGUGAAGCAUGAGCA .(((.((.(...(((((((((.((.....((((.........(((((((....)))))))..((....))..))))....))))))))))).).))))). ( -28.00, z-score = -2.01, R) >droSim1.chr2L 6015462 100 + 22036055 CGCUUCACGAAAUUCGCUUUGUGUGCGUCCUGUAAUGAAAAAUUGUGCAAAUCUGCAUAAAGGCAAAAGCAAACAGCAAAACCAAAGUGAAGCAUGAGCA .(((.((.(...(((((((((.((.....((((.........(((((((....)))))))..((....))..))))....))))))))))).).))))). ( -28.00, z-score = -2.01, R) >droSec1.super_5 4291708 100 + 5866729 CGCUUCACGAAAUUCGCUUUGUGUGCGUCCUGUAAUGAAAAAUUGUGCAAAUCUGCAUAAAGGCAAAAGCAAACAGCAAAACCAAAGUGAAGCAUGAGCA .(((.((.(...(((((((((.((.....((((.........(((((((....)))))))..((....))..))))....))))))))))).).))))). ( -28.00, z-score = -2.01, R) >droYak2.chr2L 15635570 100 - 22324452 CGCUUCACGAAAUACGCUUUGUGUGAGUCCUGUAAUGAAAAAUUGUGCAAAUCUGCAUAAAGGCAAAAGCAAACAGCAAAACCAAAGUGAAGCAUGAGCA .(((((((((..(((((...)))))..))((((.........(((((((....)))))))..((....))..))))..........)))))))....... ( -26.20, z-score = -1.88, R) >droEre2.scaffold_4929 15146961 100 + 26641161 CGCUUCACGAAACUCGCUUUGUGUGAGUCCUGUAAUGAAAAAUUGUGCAAAUCUGCAUAAAGGCAAAAGCAAACAGCAAAACCAAAGUGAAGCAUGAGCA .(((((((...((((((.....)))))).((((.........(((((((....)))))))..((....))..))))..........)))))))....... ( -29.70, z-score = -2.88, R) >droAna3.scaffold_12916 8194816 94 - 16180835 -----AACCAAAUUAG-UCUAUUUUGGUUCAGUAAUGAAACAUUGUGCAAAUGUGCAUAAUGGCGAAAGUAAACAGCACAACCAAACUGGAGCCAAAGCU -----...........-....((((((((((((.......(((((((((....)))))))))((....))...............))).))))))))).. ( -25.40, z-score = -2.64, R) >consensus CGCUUCACGAAAUUCGCUUUGUGUGCGUCCUGUAAUGAAAAAUUGUGCAAAUCUGCAUAAAGGCAAAAGCAAACAGCAAAACCAAAGUGAAGCAUGAGCA .(((.((.(...(((((((((.((.....((((.........(((((((....)))))))..((....))..))))....))))))))))).).))))). (-19.10 = -21.18 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:44 2011