Locus 8538

Sequence ID dm3.chr3RHet
Location 151,176 – 151,240
Length 64
Max. P 0.533833
window11729

overview

Window 9

Location 151,176 – 151,240
Length 64
Sequences 5
Columns 69
Reading direction reverse
Mean pairwise identity 59.41
Shannon entropy 0.71389
G+C content 0.32254
Mean single sequence MFE -14.28
Consensus MFE -2.09
Energy contribution -1.45
Covariance contribution -0.64
Combinations/Pair 1.50
Mean z-score -2.45
Structure conservation index 0.15
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.08
SVM RNA-class probability 0.533833
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3RHet 151176 64 - 2517507
UAACAGAACUAUACAGCAAUGUAGUGUUCUCAAAAUUACUGCACUCAUUU-----UAUACAGUAUAUUC
....(((((..((((....))))..)))))......(((((.........-----....)))))..... ( -10.62, z-score =  -1.71, R)
>droSim1.chrU 14564181 52 + 15797150
------------AUAGUCAUGUAGUCAUAUCUAGCUUAACAGUUCCAAUA-----UGUAGAGUAUAUUC
------------.(((..(((....)))..)))((((.(((.........-----))).))))...... (  -5.70, z-score =  -0.37, R)
>droSec1.super_60 94044 64 + 163194
UCAUAGACUUCUACAUGAAUGUAGUCAUAUCUAGCUUAACAGUUCCAAUA-----UGUAGAGUAUAUUC
...((((...(((((....))))).....))))((((.(((.........-----))).))))...... (  -9.20, z-score =  -0.13, R)
>droAna3.scaffold_13099 1323679 69 - 3324263
GAACAGAUCUGUACAGUAGUGUAGUGUUUUCAAAAACACUGCACUCAUUUUUUACUGUACAGUAUACUC
........(((((((((((((((((((((....))))))))))))........)))))))))....... ( -26.30, z-score =  -5.28, R)
>droMoj3.scaffold_6680 472603 69 + 24764193
CCAUAGUACUGUACAGUAGUAAAAUGUUCUCAAAAAUUCUGUACUCAUGCCUUGCUGUACAGUAUAUUC
.....((((((((((((((....(((....((.......))....)))...)))))))))))))).... ( -19.60, z-score =  -4.76, R)
>consensus
UAACAGAACUGUACAGUAAUGUAGUGUUAUCAAAAUUACUGCACUCAUUA_____UGUACAGUAUAUUC
.................((((((.((.................................)).)))))). ( -2.09 =  -1.45 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:30 2011