| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 134,648 – 134,770 |
| Length | 122 |
| Max. P | 0.857793 |
| Location | 134,648 – 134,770 |
|---|---|
| Length | 122 |
| Sequences | 3 |
| Columns | 136 |
| Reading direction | reverse |
| Mean pairwise identity | 54.04 |
| Shannon entropy | 0.63581 |
| G+C content | 0.40210 |
| Mean single sequence MFE | -32.22 |
| Consensus MFE | -13.22 |
| Energy contribution | -11.37 |
| Covariance contribution | -1.86 |
| Combinations/Pair | 1.69 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 134648 122 - 2517507 UCCACAAAUUUUCAAUGGGGUUCAGAUCAGGACUCUGAGGGGGCGUA-UCGAUCAC---UUUACCACA--------GUUAUAAGGGCGCCAGGUGCGUACAUUGCAC-UCUUUAUGUUUCUGAUCA-UGUCCUCUU ................((((..((((((((((.(.(((((.(((((.-...((.((---(.......)--------)).))....))))).((((((.....)))))-)))))).).)))))))).-)).)))).. ( -34.90, z-score = -1.64, R) >anoGam1.chr2L 36312154 123 + 48795086 UCCACAAAUGCUCGAUUGGAUGAAGGUCCGGACUUUGAGGUGGGGAAUUUAAUUGU---UUCGGGACA---------UUAUAAAGCACCCACAGUCUGGUAUUCAAG-GCUGUAUGCUUUGGAUCGUUAUCCUGUU .............(((.((((((....(((((((.....(((((...((((..(((---(....))))---------...))))...)))))))))))).(((((((-((.....)))))))))..)))))).))) ( -36.40, z-score = -1.16, R) >apiMel3.GroupUn 292373138 133 + 399230636 UACACAAAUUUUUAAUGGGAUUUAUAUCUGGAGUCUGCAAUGGAUACUUAACAUGCAUACUUAACAUAUGGGCUAUAUUGUAUACGAUCCAUUCUUUUACGAUCCACAACUAUAUAUUUAGGAUCGUAAUCUU--- .............((((((..((((((...((((.((((.((.........)))))).))))...))))))((......))......))))))...(((((((((...............)))))))))....--- ( -25.36, z-score = -1.75, R) >consensus UCCACAAAUUUUCAAUGGGAUUAAGAUCAGGACUCUGAGGUGGAGAAUUAAAUUGC___UUUAACACA_________UUAUAAAGGACCCACACUCUUACAUUCCAC_ACUAUAUGUUUAGGAUCGUUAUCCU_UU .................((((...((((((((((((.....)))).................................((((((((......((......))......)))))))).))))))))...)))).... (-13.22 = -11.37 + -1.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:29 2011