| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 81,289 – 81,364 |
| Length | 75 |
| Max. P | 0.506610 |
| Location | 81,289 – 81,364 |
|---|---|
| Length | 75 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 67.26 |
| Shannon entropy | 0.64744 |
| G+C content | 0.61309 |
| Mean single sequence MFE | -26.12 |
| Consensus MFE | -11.21 |
| Energy contribution | -11.88 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506610 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 81289 75 + 2517507 ACCACGUGAGCAGCAACGUGCCACGUUGACAUCCCCUUGCAACAA-CGGUGCAGGCGGAGGAGUUCGCGGGCAACU .((.(((((((.((((((.....))))).).(((.((((((....-...)))))).)))...)))))))))..... ( -28.70, z-score = -1.24, R) >droSim1.chrU 176316 75 + 15797150 ACCACGUGAGCAGCAACGUGCCACGUUGACAUCCCCUUGCAACAA-CGGUGCAGGCGGAGGAGUUCGCGGGCAACU .((.(((((((.((((((.....))))).).(((.((((((....-...)))))).)))...)))))))))..... ( -28.70, z-score = -1.24, R) >droSec1.super_28 51505 75 - 873875 ACUACGUGAGCAGCAACGUGCCACGUUGACAUCCCCGUGCAACAA-CGGUGCAGGCGGAGGAGUUCGCGGGCAACU ....(((((((.((((((.....))))).).((((((((((....-...)))..)))).))))))))))(....). ( -27.40, z-score = -0.66, R) >droYak2.chrU 25255481 75 - 28119190 AUCCCGUGAGCAGCGACGUGCCACGGGGACACCUCC-UGGAGCAAACGUCGCAGGUGGAGGAUCUUGCGCGCAACC .....(((.((((((((((((..(((((.....)))-))..))..)))))))((((.....))))))).))).... ( -28.30, z-score = -0.45, R) >droEre2.scaffold_4784 516787 59 - 25762168 AUCCCGUGAGCAGCGUCGUGCCACGGGGACACCCCC-UGCAGCAUUUGGCGCAGGUGGAG---------------- .(((((((.(((......))))))))))...((.((-(((.((.....))))))).))..---------------- ( -28.30, z-score = -2.38, R) >droAna3.scaffold_13250 1014007 69 + 3535662 ----ACCGUGUAGCAACGU--UAUAACCAUAACCCCCAGUAAGAC-CCGUGCGGGUGGAGAAUAUUGUGGGUGAAC ----....((((((...))--))))......((((.(((((..((-((....))))......))))).)))).... ( -15.30, z-score = 0.45, R) >consensus ACCACGUGAGCAGCAACGUGCCACGUUGACAUCCCC_UGCAACAA_CGGUGCAGGCGGAGGAGUUCGCGGGCAACU ...(((((.(((......))))))))......((((.((((.(....).)))))).)).................. (-11.21 = -11.88 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:26 2011