| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 80,911 – 81,011 |
| Length | 100 |
| Max. P | 0.562071 |
| Location | 80,911 – 81,011 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.80 |
| Shannon entropy | 0.48729 |
| G+C content | 0.43004 |
| Mean single sequence MFE | -22.78 |
| Consensus MFE | -13.40 |
| Energy contribution | -12.68 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.562071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 80911 100 + 2517507 GUUAGUUCUAAACUGACAGCCGA--AAUAAAG------UGAUGUUAUCG------------UAAGAUACCUGCCGUGAAUAUCAAGUCGGAGCUACGACCCUGCUACCGGCUUAUUCCAG ((((((.....))))))(((((.--.......------(((((((..((------------..((....))..))..))))))).((((......))))........)))))........ ( -25.10, z-score = -2.08, R) >droSim1.chr3h_random 1259967 100 + 1452968 UUUAGUUCUAAACUGACAGCCGA--AAUAAAG------UGACGUUAUCG------------UUAAAUAACUGCCGUGAAUAUCAAGUCGGAGCUACGACCCUGCUACCGGCUUAUUCCAG ............(((((.((...--.......------(((((....))------------))).......)).))(((((...(((((((((.........))).)))))))))))))) ( -19.73, z-score = -0.56, R) >droSec1.super_28 51269 100 - 873875 UUUAGUUCUAAACUGACAGCCGA--AAUAAAG------UGACGUUAUCGA------------AAAAUAACUGCUGUGAAUAUCAAGUCGGAGCUACGACCCUGCUACCUGCUUAUUCCAG ............(((((((((..--......)------....(((((...------------...))))).)))))(((((...(((.(((((.........))).)).))))))))))) ( -16.20, z-score = -0.12, R) >droYak2.chrU 25255230 119 - 28119190 AUCACUUCUAAACUGACAGCCGAAGAAUAAAGGCCCAUCAUCGUAAUCGAAUCUUUU-AUUUAAUAUAACCACUGUCAAUAUCAAGUCAGAGCUACGACCCUGCUACCGGCUUAUUCCAG ............(((..(((((..(((((((((.......(((....)))..)))))-))))..........(((.(........).)))(((.........)))..))))).....))) ( -16.70, z-score = -0.29, R) >droEre2.scaffold_4784 516531 119 - 25762168 AUCACUUCUAAAGUGACAGCCGAAGAAUAAAGGCCCAUCAUCGUAAUCGAGUCUUUU-AUUUAAAAUAACCGCUGUGUAUAUCAAGUCGGAGCUACGACCCUGCUACCGGCUUAUUCCAG ..((((.....))))(((((....(((((((((.......(((....)))..)))))-)))).........))))).......((((((((((.........))).)))))))....... ( -24.92, z-score = -1.13, R) >droAna3.scaffold_13250 1013510 120 + 3535662 GUCAGUUCUGGGCUGACAACCGAAUAAUAAAGACACCAUAUCUGAGACGGGUCUUUUUAUCUUUGUCAACCGCCGCGACAGUAUAGCUGAAGCUAAGACCCUGCUAUCAGCUUACUGGAA ....((..(((..((((((..((.(((.((((((.((...........))))))))))))).)))))).)))..))..(((((.(((((((((.........))).)))))))))))... ( -34.00, z-score = -1.99, R) >consensus AUCAGUUCUAAACUGACAGCCGA__AAUAAAG______UAACGUAAUCGA___________UAAAAUAACCGCCGUGAAUAUCAAGUCGGAGCUACGACCCUGCUACCGGCUUAUUCCAG .((((((...))))))...................................................................((((((((((.........))).)))))))....... (-13.40 = -12.68 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:25 2011