| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 70,912 – 70,992 |
| Length | 80 |
| Max. P | 0.589191 |
| Location | 70,912 – 70,992 |
|---|---|
| Length | 80 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 56.83 |
| Shannon entropy | 0.74406 |
| G+C content | 0.42099 |
| Mean single sequence MFE | -18.82 |
| Consensus MFE | -5.57 |
| Energy contribution | -6.63 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 70912 80 - 2517507 ---------------AGGACGAACGCUCAAACUC-UCUGAGUUAGCCGU-UGCAAUUCGUAUCGAGCAGAAAUAGAAA-AAACAAUUCGUUACAAUUU ---------------..((((((.(((((.....-..)))))..((((.-(((.....))).)).))...........-......))))))....... ( -14.70, z-score = -0.41, R) >droEre2.scaffold_4929 21334571 83 - 26641161 ---------------GGGACGAACACACGAAAUCUUCUGAGCUAGCCGCACGUACUUCGUAGCGAGCACAGCAAAUAAUAAUCAGUUCGUUACAACUU ---------------(..((((((........((....))(((.((((((((.....))).))).))..)))............))))))..)..... ( -21.30, z-score = -2.33, R) >droYak2.chrU 3175253 76 + 28119190 ---------------GGGACGAACAAACAAACUC-UCUGAGCUAGCCGU-UGCAUUUCGUAGCGAGCAGAAACAAGGA-AAUCAGUUCGUUACA---- ---------------(..((((((........((-..((..((.(((((-(((.....)))))).))))...))..))-.....))))))..).---- ( -20.02, z-score = -1.64, R) >droSec1.super_62 67539 77 - 174595 ---------------AGGACGAACGCUCAAACUC-UCUGAGCUAGCCGC-UGCAAUCCGUAGCGAGCGAUAUAAGAA--AAUCAGUUCGUUACAGU-- ---------------..((((((((((((.....-..)))))..(((((-(((.....)))))).))..........--.....))))))).....-- ( -27.50, z-score = -3.42, R) >droAna3.scaffold_13099 389671 80 - 3324263 ---------------GGAACGUACCCUCAACCUC-UGUGAGCUAGUCG--CGGCAUUUGUUGCGAACAAAAUAUAGCAAAAACAGUUCGUUACAAUCU ---------------((.......))..(((..(-(((..((((.(((--((((....)))))))........))))....))))...)))....... ( -16.90, z-score = -0.95, R) >droWil1.scaffold_180708 4703863 96 - 12563649 UAGAUAAGUGCAAAAAUUGUAAAACCACAAAAUC-CUUGAUAUUUCGGG-UCUCUCUAAGAUUAUCUUCUUUGCACCAAUGAUAAUUCUUGAUGAUUU .......(((((((..((((......))))....-(((((....)))))-...................)))))))(((.((....)))))....... ( -12.50, z-score = 0.30, R) >consensus _______________AGGACGAACACACAAACUC_UCUGAGCUAGCCGC_UGCAAUUCGUAGCGAGCAAAAUAAAAAA_AAACAGUUCGUUACAAUUU ..........................................................(((((((((.................)))))))))..... ( -5.57 = -6.63 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:25 2011