| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 32,941 – 32,993 |
| Length | 52 |
| Max. P | 0.937580 |
| Location | 32,941 – 32,993 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 66.03 |
| Shannon entropy | 0.47197 |
| G+C content | 0.44231 |
| Mean single sequence MFE | -12.87 |
| Consensus MFE | -10.28 |
| Energy contribution | -8.73 |
| Covariance contribution | -1.54 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.937580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 32941 52 + 2517507 CAGUUUAAUAGCCUUAAGCUAUUAGAGGAAUCUCUAAAGCGCAGAAAAGCCG ...(((((((((.....)))))))))((....(((.......)))....)). ( -10.10, z-score = -0.72, R) >droWil1.scaffold_181075 573494 52 + 1141854 CAGUUUAGUAGUUUAACGCUACUGACUGAGUCUCGAAAGCGUAAGAAGGCAG (((((.((((((.....))))))))))).(((((....)(....).)))).. ( -14.00, z-score = -1.49, R) >droPer1.super_128 29564 52 + 112355 CAGUUUAGCGGUUUAAAACUGCUGAAUGAGUCUCCGAGGCGCAAAAGGGUCA ..((((((((((.....))))))))))..........(((.(....).))). ( -14.50, z-score = -1.41, R) >consensus CAGUUUAGUAGUUUAAAGCUACUGAAUGAGUCUCCAAAGCGCAAAAAGGCCG ..((((((((((.....))))))))))...........((........)).. (-10.28 = -8.73 + -1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:24 2011