| Sequence ID | dm3.chr3RHet |
|---|---|
| Location | 16,400 – 16,501 |
| Length | 101 |
| Max. P | 0.826597 |
| Location | 16,400 – 16,501 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 83.49 |
| Shannon entropy | 0.28669 |
| G+C content | 0.34257 |
| Mean single sequence MFE | -23.56 |
| Consensus MFE | -16.08 |
| Energy contribution | -17.16 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3RHet 16400 101 - 2517507 UGUUUGACGGUCAUUAAGUUCUAGCGAACUUUACA--------CAUGUUGAUGUUUCGGUGACGAUCCAUUAAUAAUGAAAGACUAGACCAUUAUUUCAUUACGUUACA ........((((...((((((....))))))....--------((((((((((..(((....)))..))))))).)))........))))................... ( -25.90, z-score = -2.66, R) >droSim1.chrU 12186051 93 + 15797150 UGUUUGACGAUAAUUAAGUUCUAGCGAACUUUACA--------CAUUUUGGUGUUUCGGUGACGAUCCAUUAAUAAUGAAAGACUAGACCA---UUCCGUUACA----- ....(((((......((((((....))))))....--------((((((((((..(((....)))..)))))).)))).............---...)))))..----- ( -21.50, z-score = -2.02, R) >droSec1.super_113 20165 99 + 77858 UGUUUGACGAUCAUUAGGUUCUAGCGAACUUUACA--------CAUGUUGAUGUUUCGGUGACGAUCCAUUAGUAAUGAAAGAC--GACCAUUAUUUCAUUACGUUACA ....((((.......((((((....))))))....--------.....(((((..(((....)))..)))))(((((((((...--........))))))))))))).. ( -24.50, z-score = -1.97, R) >droYak2.chrU 19574357 101 + 28119190 UGUUUGACGAUAAUUUAGUUCUAGCGAACUUUAAA--------CAUGUUGAUGUGUCGGUGACGAUCCAUUAAUAAUGAAAGUCUAGACCAUUAUUUCAUUACGUUACA ....(((((.((((.(((((((((...(((((...--------..((((((((..(((....)))..))))))))...))))))))))..))))....))))))))).. ( -24.90, z-score = -2.41, R) >droEre2.scaffold_4929 4410726 109 + 26641161 UGUUUGACGAUAACUAAGUUUUAUCGAACUUUACAUACACGUGUAUUUUGUUGUUUCGGUGGCCAUCCAUUAAUAACGAAAUGCUAGACCAUUAUUUCUUUACGUUAUA ....(((((......((((((....))))))...........(((((((((((((..(((((....))))))))))))))))))..................))))).. ( -21.00, z-score = -1.21, R) >consensus UGUUUGACGAUAAUUAAGUUCUAGCGAACUUUACA________CAUGUUGAUGUUUCGGUGACGAUCCAUUAAUAAUGAAAGACUAGACCAUUAUUUCAUUACGUUACA ....(((((......((((((....))))))................((((((..(((....)))..))))))((((((((.............))))))))))))).. (-16.08 = -17.16 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:23 2011