| Sequence ID | dm3.chr3L |
|---|---|
| Location | 24,499,782 – 24,499,840 |
| Length | 58 |
| Max. P | 0.907451 |
| Location | 24,499,782 – 24,499,840 |
|---|---|
| Length | 58 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 62.07 |
| Shannon entropy | 0.54395 |
| G+C content | 0.45977 |
| Mean single sequence MFE | -16.30 |
| Consensus MFE | -7.87 |
| Energy contribution | -7.43 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.907451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 24499782 58 + 24543557 CAAUCAGUCUCUCAAACGCCUUGGAAAUUGAAGGGAGGAGACUGAUCGGCCGGUAGGA (.((((((((((....(.((((........))))).)))))))))).).((....)). ( -17.20, z-score = -0.99, R) >droPer1.super_243 3037 58 + 32078 CGAUCACCUUUUCGAAAACCUUUCCUAUAGCGUCCAGAAGGCAGAUGGGCCUGUAGGA (((........)))........((((((((.(((((.........))))))))))))) ( -18.30, z-score = -1.96, R) >anoGam1.chr3L 34280492 58 - 41284009 CAAUCAGUUUUUCCAAAAGUUUUCCCAAACAACUUAGAAGACUGAUUGGUCUGUAGCU ((((((((((((....(((((.........))))).)))))))))))).......... ( -13.40, z-score = -2.21, R) >consensus CAAUCAGUUUUUCAAAAACCUUUCCAAUAGAACCCAGAAGACUGAUCGGCCUGUAGGA (.((((((((((........................)))))))))).).......... ( -7.87 = -7.43 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:21 2011