| Sequence ID | dm3.chr3L |
|---|---|
| Location | 24,468,716 – 24,468,830 |
| Length | 114 |
| Max. P | 0.598391 |
| Location | 24,468,716 – 24,468,830 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 61.11 |
| Shannon entropy | 0.56298 |
| G+C content | 0.41228 |
| Mean single sequence MFE | -30.43 |
| Consensus MFE | -12.69 |
| Energy contribution | -10.93 |
| Covariance contribution | -1.76 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 24468716 114 - 24543557 CUGAGCUAAUGCCAACGCAGUUGGCAUGUCCUUCGGCUUCGCCGAGAAGAGGACAUCGGAAAGACUGCGCUUGAGUCCCGAAAUAAAUAUACGGAGCGCAUCAUCCCGGAAUUU ........((((((((...))))))))((((((((((...)))))....))))).((((...((.((((((......(((...........)))))))))))...))))..... ( -37.00, z-score = -1.56, R) >droYak2.chr2R 421428 114 - 21139217 UUGACACUUUGCCAAAGCAUUUGGCAAGUCUGUUGGGUUUAGAGAAAAUAGUGUUUCUGAGAUUGAACCGUUUAAUCCAGAAAUAAAAAUUCUAAGAGCGUUGCUCCUAAUUGU (..(((.((((((((.....))))))))..)))..)..((((((((.....((((((((.((((((.....))))))))))))))....))))..((((...)))))))).... ( -31.20, z-score = -2.89, R) >droPer1.super_62 140492 114 - 349094 UUGUACCUUUGCCAAAGCAUUUGGUAAAUCUGGGGGAUUUAAUGAGAAUAAAAUUUCCGAAAUGUUGCCGUUUAGGCCUGUGAUAAAAAUGCGUAAGGCAUUCUGUCUAAUUUU ..........(((.((((....(((((...(.((..((((.((....)).))))..)).)....))))))))).)))....((((..(((((.....))))).))))....... ( -23.10, z-score = 0.11, R) >consensus UUGAACCUUUGCCAAAGCAUUUGGCAAGUCUGUCGGAUUUAAAGAGAAUAGAAUUUCCGAAAUACUGCCGUUUAGUCCAGAAAUAAAAAUACGAAGAGCAUUAUCCCUAAUUUU ........((((((((...))))))))......(((((((.....))))...(((((((((((......))))....))))))).....................)))...... (-12.69 = -10.93 + -1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:18 2011