Locus 8522

Sequence ID	dm3.chr3L
Location	24,417,925 – 24,418,015
Length	90
Max. P	0.665430

overview

Window 8

Location	24,417,925 – 24,418,015
Length	90
Sequences	4
Columns	90
Reading direction	reverse
Mean pairwise identity	49.34
Shannon entropy	0.82241
G+C content	0.45554
Mean single sequence MFE	-22.67
Consensus MFE	-6.31
Energy contribution	-6.38
Covariance contribution	0.06
Combinations/Pair	1.67
Mean z-score	-1.39
Structure conservation index	0.28
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.37
SVM RNA-class probability	0.665430
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 24417925 90 - 24543557
CUUUGAACGUGGGAACGUGACGAUGGGGUGAGGGCUUAAGCAAGGAAUGUUUAAAUUAGGGGACGGAUGUUUAGUCUACCAGUAGGUGAC
...(((((((..((((((..(....((((....))))......)..))))))......(....)..)))))))(((.(((....)))))) ( -17.40, z-score =  -0.15, R)
>droPer1.super_160 64127 83 + 79520
UCUUGAGGGUGGCGUGAUUCUGGCGUUGAUGAAUCAAUAGGGUCCAUUGUUUAGAUUAGUGG----ACUCUAGCUGGAGUGUGGGAA---
................((((..(((((((....)))))(((((((((((.......))))))----))))).))..)))).......--- ( -26.20, z-score =  -2.49, R)
>dp4.Unknown_group_407 13808 83 - 16403
UCUUGAGGGUUGCGUGAUUCUGGCGUUGAUGAAUCAAUAGGGUCCAUUGUUUAGAUUAGUGG----ACUCUAGCUGGAGUGUGGGAA---
.........(..(...((((..(((((((....)))))(((((((((((.......))))))----))))).))..)))))..)...--- ( -26.30, z-score =  -2.65, R)
>droAna3.scaffold_13339 7686 84 + 4599533
-GUUUAUGUCUGGAUGCCAAUGAUAAUGCUAUGGGAA-AGGGUUUG-UGUCUAGCCUAUUUGAAUUAUUCCCACAGUAGGCUCUGGA---
-.......((..((.(((........((((.((((((-.(((((..-.....)))))..........)))))).)))))))))..))--- ( -20.80, z-score =  -0.27, R)
>consensus
UCUUGAGGGUGGCAUGAUUAUGACGUUGAUAAAGCAAUAGGGUCCAUUGUUUAGAUUAGUGG____ACUCUAACUGGAGUGUGGGAA___
................((((((((.((((....))))((((((((((((.......))))))....)))))))))))))).......... ( -6.31 =  -6.38 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:12 2011