Locus 8521

Sequence ID dm3.chr3L
Location 24,393,841 – 24,393,892
Length 51
Max. P 0.998327
window11706 window11707

overview

Window 6

Location 24,393,841 – 24,393,892
Length 51
Sequences 3
Columns 52
Reading direction forward
Mean pairwise identity 65.58
Shannon entropy 0.47995
G+C content 0.43739
Mean single sequence MFE -12.53
Consensus MFE -12.43
Energy contribution -11.77
Covariance contribution -0.66
Combinations/Pair 1.45
Mean z-score -1.92
Structure conservation index 0.99
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.51
SVM RNA-class probability 0.991924
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 24393841 51 + 24543557
CGGGUAUCUGAUAGUCUGGGAAGUC-GACUAUAGUAUUUCCACUUGUUUUAA
.(((......((((((.........-))))))......)))........... (  -8.60, z-score =   0.14, R)
>droGri2.scaffold_15116 1066077 50 - 1808639
AGACUAUUUUGCAGUCGGUUACGCCCGACUGCAACGUUCUCACUUGUUUU--
.((..((.((((((((((......)))))))))).))..)).........-- ( -18.90, z-score =  -4.91, R)
>droMoj3.scaffold_6500 31122631 50 + 32352404
UGAGUAUUCCGCAAUCGGUAACGCCCGACUGCAACGUUCUUACUUGUUUU--
.(((((....(((.((((......)))).)))........))))).....-- ( -10.10, z-score =  -0.98, R)
>consensus
AGAGUAUUUCGCAGUCGGUAACGCCCGACUGCAACGUUCUCACUUGUUUU__
.(((......((((((((......))))))))......)))........... (-12.43 = -11.77 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 24,393,841 – 24,393,892
Length 51
Sequences 3
Columns 52
Reading direction reverse
Mean pairwise identity 65.58
Shannon entropy 0.47995
G+C content 0.43739
Mean single sequence MFE -14.20
Consensus MFE -13.04
Energy contribution -12.60
Covariance contribution -0.44
Combinations/Pair 1.50
Mean z-score -2.82
Structure conservation index 0.92
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 3.32
SVM RNA-class probability 0.998327
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 24393841 51 - 24543557
UUAAAACAAGUGGAAAUACUAUAGUC-GACUUCCCAGACUAUCAGAUACCCG
...........((..((.((((((((-.........)))))).))))..)). (  -7.40, z-score =  -1.33, R)
>droGri2.scaffold_15116 1066077 50 + 1808639
--AAAACAAGUGAGAACGUUGCAGUCGGGCGUAACCGACUGCAAAAUAGUCU
--..........(((...((((((((((......)))))))))).....))) ( -19.80, z-score =  -4.64, R)
>droMoj3.scaffold_6500 31122631 50 - 32352404
--AAAACAAGUAAGAACGUUGCAGUCGGGCGUUACCGAUUGCGGAAUACUCA
--......((((......((((((((((......))))))))))..)))).. ( -15.40, z-score =  -2.49, R)
>consensus
__AAAACAAGUGAGAACGUUGCAGUCGGGCGUAACCGACUGCAAAAUACUCA
...........((.....((((((((((......)))))))))).....)). (-13.04 = -12.60 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:11 2011