Locus 8520

Sequence ID dm3.chr3L
Location 24,364,141 – 24,364,243
Length 102
Max. P 0.939340
window11705

overview

Window 5

Location 24,364,141 – 24,364,243
Length 102
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 57.48
Shannon entropy 0.78755
G+C content 0.39445
Mean single sequence MFE -25.77
Consensus MFE -4.18
Energy contribution -4.78
Covariance contribution 0.60
Combinations/Pair 1.45
Mean z-score -2.82
Structure conservation index 0.16
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.45
SVM RNA-class probability 0.939340
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 24364141 102 + 24543557
GAUAUCUCUG----UGGAACGCAAAUGGCGUUUCACGGCAUACACAAGAGCUCACACAGUUCAUUUACGAAAAAAACAUCGACGUAAUGCUACUAUCAGAAACGCA
((((.....(----((((((((.....)))))))))(((((((....(((((.....))))).....(((........)))..)).)))))..))))......... ( -27.00, z-score =  -3.37, R)
>droSim1.chr2h_random 2465968 106 + 3178526
UACGCCUCGGAACCUGGAAAGCUCGUAGCAUUAUCCCCAAUGCUAAUGAGCUUAAGGUGUUUUUUAUCACACACGAAAUUGAUGUUAUGCUUAUCUCAGAGGCAUU
...(((((.((((((...((((((((((((((......)))))).)))))))).))))((....(((((..........)))))....)).....)).)))))... ( -33.50, z-score =  -3.73, R)
>droSec1.super_67 72388 105 + 170185
UACGCCUCGGAACCUGGAA-GCUCGUAGCAUUAUCCCCAAUGCUAAUGAGCUUAAAGUGUUUCUUAGCACACACGAAAUUGAUGUUAUGCUUAUCUCAGAGGCAUU
...((((((((((((..((-((((((((((((......)))))).))))))))..)).)))))..((((.(((((....)).)))..)))).......)))))... ( -36.70, z-score =  -4.69, R)
>droVir3.scaffold_13036 142243 97 - 1135500
----GAUCGGAUUAUGGAACGCGGAUGGUCUUUAUAUUAAAAUC--UGAACUGACC---UUCCUUACCACCCACAACAGCGACAUUAUGCUCCUAACGGAAACUUA
----....((....(((.....(((.((((..............--......))))---.)))...))).))......(((......)))(((....)))...... ( -15.15, z-score =  -0.26, R)
>anoGam1.chr3R 11775561 102 - 53272125
--AGUUUCCUA--CUGGAAUGCACAUAGCAUUUCAAAGAAAAAACUAGACCUAAUUAAUUUUCUCAACUCAAAUGAAAUAGAUAUUAUGGCAAUAACAGAAACAUU
--.(((((...--.((((((((.....))))))))............(.((((((....((((...........)))).....)))).))).......)))))... ( -16.50, z-score =  -2.05, R)
>consensus
_ACGCCUCGGA__CUGGAACGCACAUAGCAUUUCACCCAAUACAAAUGAGCUUAAAGAGUUUCUUAACACACACGAAAUCGAUGUUAUGCUAAUAUCAGAAACAUU
...(((((............((.....))..................((((.......))))....................................)))))... ( -4.18 =  -4.78 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:10 2011