| Sequence ID | dm3.chr3L |
|---|---|
| Location | 24,340,396 – 24,340,479 |
| Length | 83 |
| Max. P | 0.582888 |
| Location | 24,340,396 – 24,340,479 |
|---|---|
| Length | 83 |
| Sequences | 3 |
| Columns | 83 |
| Reading direction | reverse |
| Mean pairwise identity | 67.87 |
| Shannon entropy | 0.47255 |
| G+C content | 0.40150 |
| Mean single sequence MFE | -17.21 |
| Consensus MFE | -10.71 |
| Energy contribution | -10.93 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582888 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 24340396 83 - 24543557 GGAAACUCUUAUUGUUCACAUACUGCUACAGUAUGUCGAGUCUUAUGUCUUACGUGAGCUACACUGUGCACUUUUAUUUUCUU (((((.......(((.(((((((((...))))))))..((.((((((.....)))))))).....).))).......))))). ( -15.34, z-score = -0.64, R) >droYak2.chrU 12988727 82 + 28119190 GGCUACUGUUUUUGUUCACUGACUGCUACAGUAUGUCGAGACUUAUGUCUUA-GUGAACUGCACUGUGCGUCUUUUAAUUGUA ((((((.((....(((((((((((((....))).)))(((((....))))))-))))))...)).))).)))........... ( -22.60, z-score = -2.18, R) >droEre2.scaffold_4784 25510638 63 - 25762168 ------GGUUCUUGUUCACAGACUGCUAAAGCAUGUCGAGUCUUAUGUCCUAUGUGAACUACAGUGUAC-------------- ------.((....(((((((((((((....))).)))..(.(....).)...))))))).)).......-------------- ( -13.70, z-score = -0.24, R) >consensus GG__ACUGUUAUUGUUCACAGACUGCUACAGUAUGUCGAGUCUUAUGUCUUA_GUGAACUACACUGUGC___UUU___UU_U_ .............((((((.((((((....))).)))(((.(....).)))..))))))........................ (-10.71 = -10.93 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:08 2011