| Sequence ID | dm3.chr3L |
|---|---|
| Location | 24,321,030 – 24,321,095 |
| Length | 65 |
| Max. P | 0.670332 |
| Location | 24,321,030 – 24,321,095 |
|---|---|
| Length | 65 |
| Sequences | 3 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 50.75 |
| Shannon entropy | 0.70814 |
| G+C content | 0.46271 |
| Mean single sequence MFE | -11.90 |
| Consensus MFE | -5.46 |
| Energy contribution | -6.03 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.81 |
| Mean z-score | -0.70 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670332 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 24321030 65 - 24543557 UUCGAGAGAGCCUGGAGCCACCUCUAGAGCCACGGCGAAAAAAUCGUGUGCCAAAAAAUCGUAUG--- .((....))((((((((....)))))).))((((.(((.....)))))))...............--- ( -14.80, z-score = -1.01, R) >dp4.chr3 1489709 61 + 19779522 UUCUAGACAGCCUGGAGCCAGUUUUAGAAACAGGCGGAACUAAUUGAUCUCAAAAAUGUUG------- .....(((((((((...(........)...)))))........(((....)))...)))).------- ( -10.60, z-score = 0.03, R) >droVir3.scaffold_13317 11260 68 + 257602 CUCCAGAGCUCCAAAACCAGCCCUUAGAGUCAAAUGGGAAACAUCGUCCCGUAAAAGCUAAUCAUACG (((.((.(((........))).))..)))....((((((.......))))))................ ( -10.30, z-score = -1.13, R) >consensus UUCCAGAGAGCCUGGAGCCACCUUUAGAGACAAGCGGAAAAAAUCGUCCCCAAAAAAAUAGU______ .....((((..((((((....))))))......((((((.......))))))....))))........ ( -5.46 = -6.03 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:07 2011