| Sequence ID | dm3.chr3L |
|---|---|
| Location | 24,312,787 – 24,312,856 |
| Length | 69 |
| Max. P | 0.687514 |
| Location | 24,312,787 – 24,312,856 |
|---|---|
| Length | 69 |
| Sequences | 3 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 52.51 |
| Shannon entropy | 0.67687 |
| G+C content | 0.46496 |
| Mean single sequence MFE | -21.40 |
| Consensus MFE | -4.22 |
| Energy contribution | -1.23 |
| Covariance contribution | -2.98 |
| Combinations/Pair | 2.08 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.20 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.687514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 24312787 69 + 24543557 CCUUCUUAGACAUACA----GCUUUCGACAAUACCUCCCAUGAGGCUGUCAACGCAUCCCUGGCAAGAAGAGG .((((((.........----......((((...((((....)))).))))...((.......))))))))... ( -14.90, z-score = -0.84, R) >droGri2.scaffold_14906 302292 69 - 14172833 CUUUCCUAGAUAUUGAAGGUGGCCUUGACAACACAUCAUAUGAUGUGAUAAAGGCUACCCUGUCGAGGG---- ....(((.((((.....(((((((((.....((((((....))))))...))))))))).)))).))).---- ( -27.30, z-score = -4.67, R) >triCas2.chrUn_85 99445 73 - 151068 CUUUUCUAGAUAUUGAGGGAUCUUUCAAUAACGCUUUCUUCGAGUCUAUGAGUGAAGCACUGCUGGAGAGGGG (((((((((.((((((((....))))))))..(((((.((((......)))).)))))....))))))))).. ( -22.00, z-score = -1.71, R) >consensus CUUUCCUAGAUAUUGA_GG_GCUUUCGACAACACAUCCUAUGAGGCUAUAAACGCAACCCUGCCGAGGAG_GG ......................(((((.((....(((....)))((.......)).....)).)))))..... ( -4.22 = -1.23 + -2.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:06 2011