| Sequence ID | dm3.chr3L |
|---|---|
| Location | 24,265,684 – 24,265,759 |
| Length | 75 |
| Max. P | 0.697821 |
| Location | 24,265,684 – 24,265,759 |
|---|---|
| Length | 75 |
| Sequences | 3 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 55.80 |
| Shannon entropy | 0.62268 |
| G+C content | 0.50227 |
| Mean single sequence MFE | -20.43 |
| Consensus MFE | -10.34 |
| Energy contribution | -10.80 |
| Covariance contribution | 0.46 |
| Combinations/Pair | 1.37 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.697821 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 24265684 75 + 24543557 AGCAUGUUGGUUGUCAUAUCAAGGUGAGGUAUGCGGCAGCGAGUGCCG-AGAACCCUGAUGCAAGUGGAACUUGCG ..(((.(((((......))))).))).(((...(((((.....)))))-...))).....(((((.....))))). ( -23.70, z-score = -0.92, R) >droSec1.super_86 55327 66 - 128402 -------AGCAUAUUG--AUUAAGUGAGCUGUGCGGCUACGAGAGCCGUAGUAGUAGAGCGAGAAGUAGCCUCGC- -------(((.((((.--....)))).))).(((((((.....)))))))........(((((.......)))))- ( -19.70, z-score = -1.45, R) >droYak2.chr2h_random 945541 72 + 3774259 ---AUGCUGUUUAUCGUUACUAGGUGAGCUAUGCGGCUACGAGAGUCGUAGAUACACUGCGAGAAACUAACUUGC- ---.(((.(((((((.......)))))))...))).(((((.....))))).......(((((.......)))))- ( -17.90, z-score = -0.16, R) >consensus ___AUG_UGCUUAUCGU_ACUAGGUGAGCUAUGCGGCUACGAGAGCCGUAGAAACACAGCGAGAAACAAACUUGC_ ........(((((((.......)))))))..(((((((.....)))))))........(((((.......))))). (-10.34 = -10.80 + 0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:47:00 2011